Browse Element(s) Details


Os.8128.1.S1_at

Description gb:AK069989.1
DB_XREF= gi:32980013
TID=Os.8128.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8128 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023037D20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023037D20, full insert sequence.
FL= gb:AK069989.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3330011/11Exopolygalacturonase precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g33260OsAffx.29789.3.S1_x_at9/111+18646802..18664363ABC-2 type transporter family protein
LOC_Os01g33260OsAffx.29789.1.S1_x_at3/111+18646802..18664363ABC-2 type transporter family protein
LOC_Os01g33260OsAffx.31885.2.S1_x_at1/111+18646802..18664363ABC-2 type transporter family protein
LOC_Os01g33270OsAffx.11297.1.S1_at11/111+18665802..18666290hypothetical protein
LOC_Os01g33290OsAffx.2138.1.S1_at11/111+18676688..18678717hypothetical protein
LOC_Os01g33300Os.8128.1.S1_at11/111+18679680..18681352Exopolygalacturonase precursor, putative, expressed
LOC_Os01g33324OsAffx.8880.1.S1_at1/111+18685874..18690126retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g33350OsAffx.23485.1.S1_at11/111+18692022..18693256zinc-binding family protein, putative
LOC_Os01g33360OsAffx.23486.1.S1_at11/111+18696856..18698902dnaK protein, expressed
LOC_Os01g33370OsAffx.11299.1.S1_s_at11/111+18701672..18703510expressed protein
LOC_Os01g33370OsAffx.11299.1.S1_at11/111+18701672..18703510expressed protein
LOC_Os01g33380NANA1+18705398..18706363hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0004650molecular_functionpolygalacturonase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8128.1.S1_at--853--10111Chr01:18680200..18680224 (25 bp)
TATGAGGACGTGCTGTCCCCGATCA
LOC_Os01g33300
Os.8128.1.S1_at--1162--8351Chr01:18680174..18680198 (25 bp)
GGCGTCCAGGCTAACGTTCGAGAAC
LOC_Os01g33300
Os.8128.1.S1_at--1002--4191Chr01:18680098..18680122 (25 bp)
CCCGAGAAGGACTGCCCCGAGAAGA
LOC_Os01g33300
Os.8128.1.S1_at--289--8071Chr01:18680070..18680094 (25 bp)
GGAGCAAGACGGTGACCATCAAGAA
LOC_Os01g33300
Os.8128.1.S1_at--842--1431Chr01:18680049..18680073 (25 bp)
AGAACGTGACGTTCCGCAACATCAC
LOC_Os01g33300
Os.8128.1.S1_at--875--4791Chr01:18679952..18679976 (25 bp)
GCTCGACGTCAACCTGAAGTACGAC
LOC_Os01g33300
Os.8128.1.S1_at--1094--3211Chr01:18679889..18679913 (25 bp)
CAAGGGCATCTCCAAGGGCTCGCTC
LOC_Os01g33300
Os.8128.1.S1_at--623--5831Chr01:18679824..18679848 (25 bp)
GACCGGCGTTATATCATCTCTCTAT
LOC_Os01g33300
Os.8128.1.S1_at--544--451Chr01:18679809..18679833 (25 bp)
ATCTCTCTATCTATCGTCGTCTGAT
LOC_Os01g33300
Os.8128.1.S1_at--893--4871Chr01:18679739..18679763 (25 bp)
GCTTTGCCGAGTGTACATGCGCCAG
LOC_Os01g33300
Os.8128.1.S1_at--988--591Chr01:18679723..18679747 (25 bp)
ATGCGCCAGCCCAATTGGGCCAAAT
LOC_Os01g33300
Target Sequence 
TATGAGGACGTGCTGTCCCCGATCACGGCGTCCAGGCTAACGTTCGAGAACATTCGGATGGACGGGGTGGCCAACCCGGT
GATCGTGGACCAGAAGTACTGCCCCGAGAAGGACTGCCCCGAGAAGAAGGGGAGCAAGACGGTGACCATCAAGAACGTGA
CGTTCCGCAACATCACCGGCACCTCCAACACGCCGGAGGCCGTCAGCCTACTCTGCTCTGACCAGCTGCCCTGCAGCGGC
ATGGAGCTGCTCGACGTCAACCTGAAGTACGACGGCAAGGACAACAAGACCATGGCCGTCTGCACCAACGCCAAGGGCAT
CTCCAAGGGCTCGCTCCAGGCCCTCGCTTGCCTCTGATCTCGATCCATCCATCGTCGACCGGCGTTATATCATCTCTCTA
TCTATCGTCGTCTGATATATGTATAATTCGCTTATATAGTATGTACTAGAAACACAACGGGGCTTTGCCGAGTGTACATG
CGCCAGCCCAATTGGGCCAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8128.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis