Browse Element(s) Details


OsAffx.23486.1.S1_at

Description tigr:9629.m03125
TID=OsAffx.23486.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=dnaK protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3336011/11dnaK protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g33290OsAffx.2138.1.S1_at11/111+18676688..18678717hypothetical protein
LOC_Os01g33300Os.8128.1.S1_at11/111+18679680..18681352Exopolygalacturonase precursor, putative, expressed
LOC_Os01g33324OsAffx.8880.1.S1_at1/111+18685874..18690126retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g33350OsAffx.23485.1.S1_at11/111+18692022..18693256zinc-binding family protein, putative
LOC_Os01g33360OsAffx.23486.1.S1_at11/111+18696856..18698902dnaK protein, expressed
LOC_Os01g33370OsAffx.11299.1.S1_s_at11/111+18701672..18703510expressed protein
LOC_Os01g33370OsAffx.11299.1.S1_at11/111+18701672..18703510expressed protein
LOC_Os01g33380NANA1+18705398..18706363hypothetical protein
LOC_Os01g33390OsAffx.23487.1.S1_at11/111+18711004..18711632hypothetical protein
LOC_Os01g33400NANA1+18713139..18713773Helix-loop-helix DNA-binding domain containing protein
LOC_Os01g33410Os.52853.1.S1_at11/111+18717069..18720977hAT family dimerisation domain containing protein, expressed
LOC_Os01g33420Os.27578.1.S1_at11/111+18721100..18728532glycosyl hydrolase family protein 27, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0009408biological_processresponse to heat
GO:0005783cellular_componentendoplasmic reticulum
GO:0005788cellular_componentendoplasmic reticulum lumen
GO:0005829cellular_componentcytosol
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23486.1.S1_at--1065--1311Chr01:18698310..18698334 (25 bp)
AGAGGACGCACGTCTTCACCACGTA
LOC_Os01g33360
OsAffx.23486.1.S1_at--192--9571Chr01:18698322..18698346 (25 bp)
TCTTCACCACGTACCTGGGCAGGCA
LOC_Os01g33360
OsAffx.23486.1.S1_at--212--8431Chr01:18698355..18698379 (25 bp)
TGGCCATCAACGTGTTCCAGGGCGA
LOC_Os01g33360
OsAffx.23486.1.S1_at--536--2731Chr01:18698393..18698417 (25 bp)
AAGGACAATACGCTCTTCGGCCGGC
LOC_Os01g33360
OsAffx.23486.1.S1_at--232--8411Chr01:18698472..18698496 (25 bp)
GGCCGATCCAGGTGACCGTCAAGGT
LOC_Os01g33360
OsAffx.23486.1.S1_at--670--2091Chr01:18698511..18698535 (25 bp)
ACATCCACGTGGAGGCGACGGACAA
LOC_Os01g33360
OsAffx.23486.1.S1_at--855--5171Chr01:18698547..18698571 (25 bp)
GCAAGTCGGAGAGGCTCTCCATCGT
LOC_Os01g33360
OsAffx.23486.1.S1_at--289--511Chr01:18698567..18698591 (25 bp)
ATCGTCTCCGGTGAAGGCCACGAGC
LOC_Os01g33360
OsAffx.23486.1.S1_at--824--971Chr01:18698673..18698697 (25 bp)
AGGAGAGAGTCGACGCCCTGAACAT
LOC_Os01g33360
OsAffx.23486.1.S1_at--290--5491Chr01:18698692..18698716 (25 bp)
GAACATGCTGGAGACTTACATAGTC
LOC_Os01g33360
OsAffx.23486.1.S1_at--201--551Chr01:18698793..18698817 (25 bp)
ATCCGGCCGCCGAGAAAGAGGACTA
LOC_Os01g33360
Target Sequence 
AGAGGACGCACGTCTTCACCACGTACCTGGGCAGGCAGACGGCCGTGGCCATCAACGTGTTCCAGGGCGAGGGCAGCACG
GCGAAGGACAATACGCTCTTCGGCCGGCTCGTGCTCACCGGAATCCCGCCGGCGAGCGTATGGAACTGGGGGTGGCGGTG
GCGGCCGATCCAGGTGACCGTCAAGGTGGACGAGCTCGGCGACATCCACGTGGAGGCGACGGACAAGGGCGGCTCCGGCA
AGTCGGAGAGGCTCTCCATCGTCTCCGGTGAAGGCCACGAGCACGGCCGCCTAAGCAAGGAGGAGATCGACCGGATGATC
CGCGAGGTGGCGGAGGATCTCGTCGAGGAGGAGAGGATCGTGAAGGAGAGAGTCGACGCCCTGAACATGCTGGAGACTTA
CATAGTCAAGAACACGGCGGTGACCGGCGGCGAGACGGATTGCGAGGCGAAGGCGAGGGCGGCGAGCGAGTGGCTCGACG
GCAATCCGGCCGCCGAGAAAGAGGACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23486.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis