Browse Element(s) Details


OsAffx.11301.1.S1_at

Description tigr:9629.m03132
TID=OsAffx.11301.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3343011/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g33390OsAffx.23487.1.S1_at11/111+18711004..18711632hypothetical protein
LOC_Os01g33400NANA1+18713139..18713773Helix-loop-helix DNA-binding domain containing protein
LOC_Os01g33410Os.52853.1.S1_at11/111+18717069..18720977hAT family dimerisation domain containing protein, expressed
LOC_Os01g33420Os.27578.1.S1_at11/111+18721100..18728532glycosyl hydrolase family protein 27, putative, expressed
LOC_Os01g33430OsAffx.11301.1.S1_at11/111+18732198..18737254Leucine Rich Repeat family protein
LOC_Os01g33440OsAffx.673.1.S1_at11/111+18739470..18742196retrotransposon protein, putative, unclassified
LOC_Os01g33440OsAffx.673.1.S1_x_at11/111+18739470..18742196retrotransposon protein, putative, unclassified
LOC_Os01g33440OsAffx.17708.1.S1_at1/111+18739470..18742196retrotransposon protein, putative, unclassified
LOC_Os01g33450OsAffx.23489.1.S1_at10/111+18743766..18745290expressed protein
LOC_Os01g33460OsAffx.5954.5.S1_x_at6/111+18752291..18757613retrotransposon protein, putative, unclassified
LOC_Os01g33460OsAffx.5954.1.S1_x_at4/111+18752291..18757613retrotransposon protein, putative, unclassified
LOC_Os01g33460OsAffx.5954.3.S1_x_at3/111+18752291..18757613retrotransposon protein, putative, unclassified
LOC_Os01g33470OsAffx.5954.4.S1_x_at2/111+18758807..18760302hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009598biological_processdetection of pathogenic bacteria
GO:0009626biological_processhypersensitive response
GO:0005886cellular_componentplasma membrane
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11301.1.S1_at--942--6131Chr01:18733174..18733198 (25 bp)
GAGGTATGGTAACTTCTTCCCGAGC
LOC_Os01g33430
OsAffx.11301.1.S1_at--953--5851Chr01:18733153..18733177 (25 bp)
GAGCCTGGAGACACTCTGGGTATCT
LOC_Os01g33430
OsAffx.11301.1.S1_at--1034--9451Chr01:18733139..18733163 (25 bp)
TCTGGGTATCTCACCTTGTACAAGC
LOC_Os01g33430
OsAffx.11301.1.S1_at--941--7031Chr01:18733122..18733146 (25 bp)
GTACAAGCCCGCTGCATTTGGAGCA
LOC_Os01g33430
OsAffx.11301.1.S1_at--745--1671Chr01:18733054..18733078 (25 bp)
AGCCTTATCAAAGCTACGGTGCATA
LOC_Os01g33430
OsAffx.11301.1.S1_at--624--7791Chr01:18732989..18733013 (25 bp)
GGTCCTTACCCACAATGGAGAGCTT
LOC_Os01g33430
OsAffx.11301.1.S1_at--698--2131Chr01:18732928..18732952 (25 bp)
ACAGATCTTCCCAAAGCCGGGTAGT
LOC_Os01g33430
OsAffx.11301.1.S1_at--294--2591Chr01:18732893..18732917 (25 bp)
AACGTACTGAATTCCCAAGCCTGAG
LOC_Os01g33430
OsAffx.11301.1.S1_at--70--7371Chr01:18732827..18732851 (25 bp)
GTGAAAGAGCCATGTCAGCACCCAT
LOC_Os01g33430
OsAffx.11301.1.S1_at--1159--5991Chr01:18732798..18732822 (25 bp)
GAGACCATCAAGCTCAGAGGCTGCT
LOC_Os01g33430
OsAffx.11301.1.S1_at--1055--7671Chr01:18732772..18732796 (25 bp)
GGGTATCAAACGTCTGCCAGCCATC
LOC_Os01g33430
Target Sequence 
GAGGTATGGTAACTTCTTCCCGAGCCTGGAGACACTCTGGGTATCTCACCTTGTACAAGCCCGCTGCATTTGGAGCACAG
GATTACGTTTTTGGAAACCAATAGCAAGGACCACACCTGCAGCCTTATCAAAGCTACGGTGCATACACCTGCACTCCTGC
CCCAGACTAAGACATGTCCTCCCCTGGTCCTTACCCACAATGGAGAGCTTGGAAACCATCCACATCACCTATTGTGGTGA
GCTCACACAGATCTTCCCAAAGCCGGGTAGTTGCTGGACAGAACGTACTGAATTCCCAAGCCTGAGACGAATCCATCTCC
AAGATCTCCCCATGCTGCAGGACATATGTGAAAGAGCCATGTCAGCACCCATGCTGGAGACCATCAAGCTCAGAGGCTGC
TGGGGTATCAAACGTCTGCCAGCCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11301.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis