Browse Element(s) Details


Os.50495.1.S1_at

Description gb:AK121448.1
DB_XREF= gi:37991071
TID=Os.50495.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.50495 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013147M19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023142E02, full insert sequence.
FL= gb:AK068265.1 gb:AK121448.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3502011/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g34990OsAffx.6027.1.S1_at11/118+21904523..21904840Late embryogenesis abundant protein
LOC_Os08g35000Os.27481.1.S2_at11/118+21906077..21915834expressed protein
LOC_Os08g35000Os.27481.1.S1_at11/118+21906077..21915834expressed protein
LOC_Os08g35000OsAffx.23485.1.S1_at1/118+21906077..21915834expressed protein
LOC_Os08g35000Os.22539.2.A1_a_at1/118+21906077..21915834expressed protein
LOC_Os08g35010NANA8+21921240..21925855hypothetical protein
LOC_Os08g35020Os.50495.1.S1_at11/118+21927204..21932299retrotransposon protein, putative, unclassified, expressed
LOC_Os08g35030OsAffx.17341.1.S1_at11/118+21933338..21934835hypothetical protein
LOC_Os08g35040NANA8+21941365..21944674retrotransposon protein, putative, unclassified
LOC_Os08g35050Os.22539.2.A1_a_at11/118+21952046..21960915expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50495.1.S1_at--190--2811Chr08:21931740..21931764 (25 bp)
AAGTTGGGTCGGCAGCTTATCGTCT
LOC_Os08g35020
Os.50495.1.S1_at--593--10131Chr08:21931757..21931781 (25 bp)
TATCGTCTGGCTTTACCTGAAGGCA
LOC_Os08g35020
Os.50495.1.S1_at--1009--2931Chr08:21931776..21931800 (25 bp)
AAGGCAGTGCGGTCCATCCTGTGTT
LOC_Os08g35020
Os.50495.1.S1_at--896--4231Chr08:21931884..21931908 (25 bp)
CCGATGTGTGGCCTGAACTGATTCT
LOC_Os08g35020
Os.50495.1.S1_at--115--4831Chr08:21931940..21931964 (25 bp)
GCTCATGTTCAGGTGCTTATCAAGT
LOC_Os08g35020
Os.50495.1.S1_at--842--10171Chr08:21931957..21931981 (25 bp)
TATCAAGTGGTCATCTCTGTCTGCT
LOC_Os08g35020
Os.50495.1.S1_at--187--8731Chr08:21931974..21931998 (25 bp)
TGTCTGCTGATGATGCCACCTGGGA
LOC_Os08g35020
Os.50495.1.S1_at--463--8811Chr08:21932010..21932034 (25 bp)
TGTTGAAGACACGATTCCCTTCTGC
LOC_Os08g35020
Os.50495.1.S1_at--125--2691Chr08:21932049..21932073 (25 bp)
AAGCTGCATCTTTGGCGGGCGGTAC
LOC_Os08g35020
Os.50495.1.S1_at--1040--8871Chr08:21932083..21932107 (25 bp)
TGATGGTATTCAGTGCGACGCGCCA
LOC_Os08g35020
Os.50495.1.S1_at--216--5812Chr08:21932099..21932123 (25 bp)
GACGCGCCACAGTAGTCGTGATGGA
LOC_Os08g35020
Target Sequence 
AAGTTGGGTCGGCAGCTTATCGTCTGGCTTTACCTGAAGGCAGTGCGGTCCATCCTGTGTTTCATGTGTCTCAACTCAAA
GCTCATGTGCCAGATCACACTCCAGTGTTTACTTCTCTACCCACACCGGTTGTACTGGATGCTGCCGATGTGTGGCCTGA
ACTGATTCTGGACAGGCGTCTGGTAAAAAAGGGGAATGCAGCTCATGTTCAGGTGCTTATCAAGTGGTCATCTCTGTCTG
CTGATGATGCCACCTGGGAGGATTATGATGTGTTGAAGACACGATTCCCTTCTGCGCCAGNTTGGGGACAAGCTGCATCT
TTGGCGGGCGGTACTGTCACAGCTGATGGTATTCAGTGCGACGCGCCACAGTAGTCGTGATGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50495.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis