Browse Element(s) Details


OsAffx.17340.1.S1_at

Description tigr:9636.m03511
TID=OsAffx.17340.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3498011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g34950Os.27526.1.S1_s_at11/118+21868685..21879039phosphatidylinositol-4-phosphate 5-kinase family protein, putative, expressed
LOC_Os08g34950Os.53739.1.S1_x_at11/118+21868685..21879039phosphatidylinositol-4-phosphate 5-kinase family protein, putative, expressed
LOC_Os08g34960OsAffx.17339.1.S1_at11/118+21879775..21880377Myb-like DNA-binding domain containing protein
LOC_Os08g34970Os.24582.1.S1_at11/118+21880977..21891814Sec34-like family protein, expressed
LOC_Os08g34970Os.55324.1.S1_at3/118+21880977..21891814Sec34-like family protein, expressed
LOC_Os08g34980OsAffx.17340.1.S1_at11/118+21896788..21897217hypothetical protein
LOC_Os08g34990OsAffx.6027.1.S1_at11/118+21904523..21904840Late embryogenesis abundant protein
LOC_Os08g35000Os.27481.1.S2_at11/118+21906077..21915834expressed protein
LOC_Os08g35000Os.27481.1.S1_at11/118+21906077..21915834expressed protein
LOC_Os08g35000OsAffx.23485.1.S1_at1/118+21906077..21915834expressed protein
LOC_Os08g35000Os.22539.2.A1_a_at1/118+21906077..21915834expressed protein
LOC_Os08g35010NANA8+21921240..21925855hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17340.1.S1_at--769--4291Chr08:21897160..21897184 (25 bp)
CCTAGACTTAAAGGGATGGCGCCTA
LOC_Os08g34980
OsAffx.17340.1.S1_at--213--5191Chr08:21897156..21897180 (25 bp)
GACTTAAAGGGATGGCGCCTAAGGA
LOC_Os08g34980
OsAffx.17340.1.S1_at--1127--8451Chr08:21897144..21897168 (25 bp)
TGGCGCCTAAGGAAGACGGCGGCCT
LOC_Os08g34980
OsAffx.17340.1.S1_at--754--3911Chr08:21897121..21897145 (25 bp)
CTGGCAATGGGCGTCAGCGAGGCGC
LOC_Os08g34980
OsAffx.17340.1.S1_at--1072--1631Chr08:21897106..21897130 (25 bp)
AGCGAGGCGCCGGTAGCAACACTGA
LOC_Os08g34980
OsAffx.17340.1.S1_at--97--6211Chr08:21897103..21897127 (25 bp)
GAGGCGCCGGTAGCAACACTGAAGC
LOC_Os08g34980
OsAffx.17340.1.S1_at--956--6951Chr08:21897094..21897118 (25 bp)
GTAGCAACACTGAAGCCACTGGGAT
LOC_Os08g34980
OsAffx.17340.1.S1_at--788--2451Chr08:21897089..21897113 (25 bp)
AACACTGAAGCCACTGGGATGGAGG
LOC_Os08g34980
OsAffx.17340.1.S1_at--611--1051Chr08:21896856..21896878 (23 bp)
AGGGTCACTAACAAGGTGGATGCTG
LOC_Os08g34980
OsAffx.17340.1.S1_at--741--6171Chr08:21896822..21896846 (25 bp)
GAGGAGGTGGCAACGACATTTTACA
LOC_Os08g34980
OsAffx.17340.1.S1_at--808--1031Chr08:21896818..21896842 (25 bp)
AGGTGGCAACGACATTTTACACAAG
LOC_Os08g34980
Target Sequence 
CCTAGACTTAAAGGGATGGCGCCTAAGGAAGACGGCGGCCTGGCAATGGGCGTCAGCGAGGCGCCGGTAGCAACACTGAA
GCCACTGGGATGGAGGAGGGTCACTAACAAGGTGGATGCTGGGGTGAAAGGAGGAGGTGGCAACGACATTTTACACAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17340.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis