Browse Element(s) Details


Os.53739.1.S1_x_at

Description gb:AK099642.1
DB_XREF= gi:32984851
TID=Os.53739.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53739 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013060L05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013060L05, full insert sequence.
FL= gb:AK099642.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3495011/11phosphatidylinositol-4-phosphate 5-kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g34900Os.20317.1.S1_at11/118+21845226..21848724Pectinesterase PPE8B precursor, putative, expressed
LOC_Os08g34910Os.9647.1.S1_at11/118+21848769..21851212Pectinesterase-3 precursor, putative, expressed
LOC_Os08g34920OsAffx.29518.1.S1_at11/118+21854331..21857002hypothetical protein
LOC_Os08g34930OsAffx.6026.1.S1_at11/118+21858873..21859433hypothetical protein
LOC_Os08g34940NANA8+21866134..21866391hypothetical protein
LOC_Os08g34950Os.27526.1.S1_s_at11/118+21868685..21879039phosphatidylinositol-4-phosphate 5-kinase family protein, putative, expressed
LOC_Os08g34950Os.53739.1.S1_x_at11/118+21868685..21879039phosphatidylinositol-4-phosphate 5-kinase family protein, putative, expressed
LOC_Os08g34960OsAffx.17339.1.S1_at11/118+21879775..21880377Myb-like DNA-binding domain containing protein
LOC_Os08g34970Os.24582.1.S1_at11/118+21880977..21891814Sec34-like family protein, expressed
LOC_Os08g34970Os.55324.1.S1_at3/118+21880977..21891814Sec34-like family protein, expressed
LOC_Os08g34980OsAffx.17340.1.S1_at11/118+21896788..21897217hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0008270molecular_functionzinc ion binding
GO:0016308molecular_function1-phosphatidylinositol-4-phosphate 5-kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53739.1.S1_x_at--131--3211Chr08:21873035..21873059 (25 bp)
CAATGGTAATGTGCTCTCCTGAGTA
LOC_Os08g34950
Os.53739.1.S1_x_at--48--2391Chr08:21873073..21873097 (25 bp)
AAACTGGGAGCTGGTTCTGCCCAAA
LOC_Os08g34950
Os.53739.1.S1_x_at--163--10111Chr08:21873150..21873174 (25 bp)
TATGGTTCCTTGGTCATCTACTGAT
LOC_Os08g34950
Os.53739.1.S1_x_at--597--451Chr08:21873165..21873189 (25 bp)
ATCTACTGATCCCTTGGTTCAGCAA
LOC_Os08g34950
Os.53739.1.S1_x_at--49--3051Chr08:21873188..21873212 (25 bp)
AATCGGCCAGTTCACTTTGTCATTG
LOC_Os08g34950
Os.53739.1.S1_x_at--616--7131Chr08:21873206..21873230 (25 bp)
GTCATTGTCCTTCTTGTTCTAGAGA
LOC_Os08g34950
Os.53739.1.S1_x_at--1073--5531Chr08:21873268..21873292 (25 bp)
GAAACATCTGGACATACCCTGGATA
LOC_Os08g34950
Os.53739.1.S1_x_at--835--3191Chr08:21873300..21873324 (25 bp)
CAATGCGTTGTCTGCACATCGAACA
LOC_Os08g34950
Os.53739.1.S1_x_at--199--6011Chr08:21873340..21873364 (25 bp)
GAGAGCGGTCACTTATTTGCCTATA
LOC_Os08g34950
Os.53739.1.S1_x_at--315--8731Chr08:21873398..21873422 (25 bp)
TGTCTGTTCCTCTCAATGTGCAAAT
LOC_Os08g34950
Os.53739.1.S1_x_at--1065--1191Chr08:21873502..21873526 (25 bp)
AGTATATTGGTTTCTCTGTCTTCCC
LOC_Os08g34950
Target Sequence 
CAATGGTAATGTGCTCTCCTGAGTATAAAAGCTGCAAAAAACTGGGAGCTGGTTCTGCCCAAACCGAATCTGCCCATTTC
AATGGCCAGGATAAAAATATTGCCTGTTTGCATGGTATGGTTCCTTGGTCATCTACTGATCCCTTGGTTCAGCAATCGGC
CAGTTCACTTTGTCATTGTCCTTCTTGTTCTAGAGATGTAGTTAATAAAAAGCATTTTGAAGAACGTCAACCTGAAACAT
CTGGACATACCCTGGATAATGATTTCAATGCGTTGTCTGCACATCGAACAAATTTGGAGTCTGTTGAGAGCGGTCACTTA
TTTGCCTATAATTCTGAGAATGGTGACAAGATAAGAGCTAAACTGTCTGTTCCTCTCAATGTGCAAATTTCTCTTGATGA
TGACAGTTCAAAGGATGATTCAGTAATAAAAAAAGATGAAATTCCGGCATCTCCTGCTGACAACCAGAGTATATTGGTTT
CTCTGTCTTCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53739.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis