Browse Element(s) Details


Os.24582.1.S1_at

Description gb:AK067199.1
DB_XREF= gi:32977217
TID=Os.24582.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.24582 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013097F22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013097F22, full insert sequence.
FL= gb:AK067199.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3497011/11Sec34-like family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g34920OsAffx.29518.1.S1_at11/118+21854331..21857002hypothetical protein
LOC_Os08g34930OsAffx.6026.1.S1_at11/118+21858873..21859433hypothetical protein
LOC_Os08g34940NANA8+21866134..21866391hypothetical protein
LOC_Os08g34950Os.27526.1.S1_s_at11/118+21868685..21879039phosphatidylinositol-4-phosphate 5-kinase family protein, putative, expressed
LOC_Os08g34950Os.53739.1.S1_x_at11/118+21868685..21879039phosphatidylinositol-4-phosphate 5-kinase family protein, putative, expressed
LOC_Os08g34960OsAffx.17339.1.S1_at11/118+21879775..21880377Myb-like DNA-binding domain containing protein
LOC_Os08g34970Os.24582.1.S1_at11/118+21880977..21891814Sec34-like family protein, expressed
LOC_Os08g34970Os.55324.1.S1_at3/118+21880977..21891814Sec34-like family protein, expressed
LOC_Os08g34980OsAffx.17340.1.S1_at11/118+21896788..21897217hypothetical protein
LOC_Os08g34990OsAffx.6027.1.S1_at11/118+21904523..21904840Late embryogenesis abundant protein
LOC_Os08g35000Os.27481.1.S2_at11/118+21906077..21915834expressed protein
LOC_Os08g35000Os.27481.1.S1_at11/118+21906077..21915834expressed protein
LOC_Os08g35000OsAffx.23485.1.S1_at1/118+21906077..21915834expressed protein
LOC_Os08g35000Os.22539.2.A1_a_at1/118+21906077..21915834expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24582.1.S1_at--260--9011Chr08:21890449..21890473 (25 bp)
TGCAAAATCCATCTACGCGGTTGAT
LOC_Os08g34970
Os.24582.1.S1_at--33--4851Chr08:21891343..21891367 (25 bp)
GCTACACTCCCTTCTGAAGTCAGAA
LOC_Os08g34970
Os.24582.1.S1_at--64--10851Chr08:21891393..21891417 (25 bp)
TTGGTATGTTGCCTATACCCGACCT
LOC_Os08g34970
Os.24582.1.S1_at--703--9351Chr08:21891429..21891453 (25 bp)
TCGACGCTCTTTTGTAACCGTTATC
LOC_Os08g34970
Os.24582.1.S1_at--806--1291Chr08:21891455..21891479 (25 bp)
AGATGCAAATGCGACCCTACGTTTT
LOC_Os08g34970
Os.24582.1.S1_at--509--5931Chr08:21891578..21891602 (25 bp)
GAGCATCATTCTTGTGTGGAGGTCA
LOC_Os08g34970
Os.24582.1.S1_at--876--631Chr08:21891617..21891641 (25 bp)
ATGCTTGACGTGATGTTCCCACTGG
LOC_Os08g34970
Os.24582.1.S1_at--746--7411Chr08:21891660..21891684 (25 bp)
GTGATTGCGTCTTTTCAGCTAACAA
LOC_Os08g34970
Os.24582.1.S1_at--721--9851Chr08:21891692..21891716 (25 bp)
TACACAAGTGGTTCCGTTTGGCCGA
LOC_Os08g34970
Os.24582.1.S1_at--1052--2611Chr08:21891743..21891767 (25 bp)
AACCCCTGCAGTTGTATCGTGTGAT
LOC_Os08g34970
Os.24582.1.S1_at--452--6451Chr08:21891765..21891789 (25 bp)
GATCACACTTTAATTTCTTCCCTTT
LOC_Os08g34970
Target Sequence 
TGCAAAATCCATCTACGCGGTTGATTTTATTCAAACCAATCAAGACAAATATAGTTGAGGCTCATATACAGCTACACTCC
CTTCTGAAGTCAGAATACACAGCTGACGAAATCCAATCAATTGGTATGTTGCCTATACCCGACCTCCAGTCTCAGCTCGA
CGCTCTTTTGTAACCGTTATCAAGATGCAAATGCGACCCTACGTTTTGTTCGTTGAGACGGTAAATGGTATCCTGAAGTA
CAGTAACCCCGTTGTACCAGAGTGATCAGTGATGTTGTAAAAATGTACTATGTTACTGTGGAATGGAGCATCATTCTTGT
GTGGAGGTCAGTGTGCACAATGCCATGCTTGACGTGATGTTCCCACTGGGCCAGCAATGGCGGGTCCGTGATTGCGTCTT
TTCAGCTAACAAGTTACTGTACACAAGTGGTTCCGTTTGGCCGAGGATAAAGTGNTGGACCACCACCCCCAACCCCTGCA
GTTGTATCGTGTGATCACACTTTAATTTCTTCCCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24582.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis