Browse Element(s) Details


OsAffx.17339.1.S1_at

Description tigr:9636.m03509
TID=OsAffx.17339.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3496011/11Myb-like DNA-binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g34920OsAffx.29518.1.S1_at11/118+21854331..21857002hypothetical protein
LOC_Os08g34930OsAffx.6026.1.S1_at11/118+21858873..21859433hypothetical protein
LOC_Os08g34940NANA8+21866134..21866391hypothetical protein
LOC_Os08g34950Os.27526.1.S1_s_at11/118+21868685..21879039phosphatidylinositol-4-phosphate 5-kinase family protein, putative, expressed
LOC_Os08g34950Os.53739.1.S1_x_at11/118+21868685..21879039phosphatidylinositol-4-phosphate 5-kinase family protein, putative, expressed
LOC_Os08g34960OsAffx.17339.1.S1_at11/118+21879775..21880377Myb-like DNA-binding domain containing protein
LOC_Os08g34970Os.24582.1.S1_at11/118+21880977..21891814Sec34-like family protein, expressed
LOC_Os08g34970Os.55324.1.S1_at3/118+21880977..21891814Sec34-like family protein, expressed
LOC_Os08g34980OsAffx.17340.1.S1_at11/118+21896788..21897217hypothetical protein
LOC_Os08g34990OsAffx.6027.1.S1_at11/118+21904523..21904840Late embryogenesis abundant protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17339.1.S1_at--734--1491Chr08:21879866..21879890 (25 bp)
AGCACCGGCGGCAGAACTGGGCGGA
LOC_Os08g34960
OsAffx.17339.1.S1_at--1010--1431Chr08:21879878..21879902 (25 bp)
AGAACTGGGCGGAGATCGCGCTGGC
LOC_Os08g34960
OsAffx.17339.1.S1_at--1083--9131Chr08:21879935..21879959 (25 bp)
TGCGGTGGTGCCAGCACCTGTCGCC
LOC_Os08g34960
OsAffx.17339.1.S1_at--286--4511Chr08:21879985..21880009 (25 bp)
GCCGAGGAGGACGCGATCATCCTCG
LOC_Os08g34960
OsAffx.17339.1.S1_at--467--9111Chr08:21880115..21880139 (25 bp)
TGCTGCAAGTGCAACACGCCAGCGG
LOC_Os08g34960
OsAffx.17339.1.S1_at--884--5991Chr08:21880178..21880202 (25 bp)
GAGACGACCGGGACGATGCCCCAGT
LOC_Os08g34960
OsAffx.17339.1.S1_at--982--1851Chr08:21880181..21880205 (25 bp)
ACGACCGGGACGATGCCCCAGTCTG
LOC_Os08g34960
OsAffx.17339.1.S1_at--1102--3971Chr08:21880236..21880260 (25 bp)
CGTGAAGGAGGCTGGCTTATTCGCC
LOC_Os08g34960
OsAffx.17339.1.S1_at--634--911Chr08:21880244..21880268 (25 bp)
AGGCTGGCTTATTCGCCGGTGAGAA
LOC_Os08g34960
OsAffx.17339.1.S1_at--85--3671Chr08:21880251..21880275 (25 bp)
CTTATTCGCCGGTGAGAAGGATGTG
LOC_Os08g34960
OsAffx.17339.1.S1_at--1001--7671Chr08:21880309..21880333 (25 bp)
GGGTTGCCGGTGCTGTGCGAGGCGG
LOC_Os08g34960
Target Sequence 
AGCACCGGCGGCAGAACTGGGCGGAGATCGCGCTGGCGCTGCCCCGGCGCGGGCCCAAGTCGTGCCGGCTGCGGTGGTGC
CAGCACCTGTCGCCGGAGCTGGACAGCCGGGTCTTCACCGCCGAGGAGGACGCGATCATCCTCGCGCAGCAGCGCGTGCA
CGGCAACAAGTGGGCCACCATCGCGCGCTGCCTCCCCGGCCGCTACGACAACGCCGTCAAGAACCGGTGGAACTCGGCGC
TCCGCAAGCTGCTGCAAGTGCAACACGCCAGCGGCGCCGGCTCCCCGCCGGCCGCTGCCGCCGCCGCCGCCGGAGACGAC
CGGGACGATGCCCCAGTCTGCCTCCAGCTGTTCCCCGCGAGGGCCGGGGGCGTGAAGGAGGCTGGCTTATTCGCCGGTGA
GAAGGATGTGGAGGAGGAGGACGTGGCGACCAGCCTGACGCTGGGGTTGCCGGTGCTGTGCGAGGCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17339.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis