Browse Element(s) Details


Os.27526.1.S1_s_at

Description gb:AK073924.1
DB_XREF= gi:32983947
TID=Os.27526.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.27526 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033094J24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033074N18, full insert sequence.
FL= gb:AK102479.1 gb:AK073924.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3495011/11phosphatidylinositol-4-phosphate 5-kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g34900Os.20317.1.S1_at11/118+21845226..21848724Pectinesterase PPE8B precursor, putative, expressed
LOC_Os08g34910Os.9647.1.S1_at11/118+21848769..21851212Pectinesterase-3 precursor, putative, expressed
LOC_Os08g34920OsAffx.29518.1.S1_at11/118+21854331..21857002hypothetical protein
LOC_Os08g34930OsAffx.6026.1.S1_at11/118+21858873..21859433hypothetical protein
LOC_Os08g34940NANA8+21866134..21866391hypothetical protein
LOC_Os08g34950Os.27526.1.S1_s_at11/118+21868685..21879039phosphatidylinositol-4-phosphate 5-kinase family protein, putative, expressed
LOC_Os08g34950Os.53739.1.S1_x_at11/118+21868685..21879039phosphatidylinositol-4-phosphate 5-kinase family protein, putative, expressed
LOC_Os08g34960OsAffx.17339.1.S1_at11/118+21879775..21880377Myb-like DNA-binding domain containing protein
LOC_Os08g34970Os.24582.1.S1_at11/118+21880977..21891814Sec34-like family protein, expressed
LOC_Os08g34970Os.55324.1.S1_at3/118+21880977..21891814Sec34-like family protein, expressed
LOC_Os08g34980OsAffx.17340.1.S1_at11/118+21896788..21897217hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0008270molecular_functionzinc ion binding
GO:0016308molecular_function1-phosphatidylinositol-4-phosphate 5-kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27526.1.S1_s_at--819--91Chr08:21878496..21878520 (25 bp)
ATTCCGGAGCAATGGATGCCTGCAA
LOC_Os08g34950
Os.27526.1.S1_s_at--634--6351Chr08:21878510..21878534 (25 bp)
GATGCCTGCAATAATCAATCCGAGC
LOC_Os08g34950
Os.27526.1.S1_s_at--132--931Chr08:21878612..21878636 (25 bp)
AGGCAGAGAGCACCTGGTTTTTTGT
LOC_Os08g34950
Os.27526.1.S1_s_at--651--2431Chr08:21878649..21878673 (25 bp)
AAAAGCGCCAAACGATCAGTCTGGA
LOC_Os08g34950
Os.27526.1.S1_s_at--82--3451Chr08:21878665..21878689 (25 bp)
CAGTCTGGATGCTGCGGCATCAATG
LOC_Os08g34950
Os.27526.1.S1_s_at--844--9591Chr08:21878727..21878751 (25 bp)
TCATTTGCACAGATCCGATTGCAGT
LOC_Os08g34950
Os.27526.1.S1_s_at--819--51Chr08:21878744..21878768 (25 bp)
ATTGCAGTGGAGTCGTCTTGGCTCA
LOC_Os08g34950
Os.27526.1.S1_s_at--569--3611Chr08:21878760..21878784 (25 bp)
CTTGGCTCAAGAATCATCGGGTGTA
LOC_Os08g34950
Os.27526.1.S1_s_at--4--9751Chr08:21878844..21878868 (25 bp)
TAATAATATAATGTCGTCGCTTCTC
LOC_Os08g34950
Os.27526.1.S1_s_at--386--3711Chr08:21878870..21878894 (25 bp)
CTAGTTCCCATTCCATTTTGGTTGG
LOC_Os08g34950
Os.27526.1.S1_s_at--155--7071Chr08:21878928..21878952 (25 bp)
GTAAGTGCTCGTTGTATATTATTAT
LOC_Os08g34950
Target Sequence 
ATTCCGGAGCAATGGATGCCTGCAATAATCAATCCGAGCAAATCATCATCAAATCTTTGCCAAGAAGATCCTCAAAATGC
TTCACAAGAGTAGTACAATATTCAGTTCATTATGCCAGGCAGAGAGCACCTGGTTTTTTGTCTTGATCCAATCAAAAGCG
CCAAACGATCAGTCTGGATGCTGCGGCATCAATGTGGNATTACGACTGCAATTATCAAAATGCTTGGACTCTCATTTGCA
CAGATCCGATTGCAGTGGAGTCGTCTTGGCTCAAGAATCATCGGGTGTATATATCCTTGAAACTGTAATTATGCATTAGT
TTTTTTATTTTCTTTTTGATTTATTATGTAATAATATAATGTCGTCGCTTCTCTCTAGTTCCCATTCCATTTTGGTTGGA
TGTAAACAATAGAAGTGGGGCATTTTTTTTTTGTAAGTGCTCGTTGTATATTATTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27526.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis