Browse Element(s) Details


Os.20317.1.S1_at

Description gb:AK058651.1
DB_XREF= gi:32968669
TID=Os.20317.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20317 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-018-F02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-018-F02, full insert sequence.
FL= gb:AK058651.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3490011/11Pectinesterase PPE8B precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g34880OsAffx.17337.1.S1_at11/118+21818078..21820424expressed protein
LOC_Os08g34890NANA8+21834571..21836926F-box domain containing protein
LOC_Os08g34900Os.20317.1.S1_at11/118+21845226..21848724Pectinesterase PPE8B precursor, putative, expressed
LOC_Os08g34910Os.9647.1.S1_at11/118+21848769..21851212Pectinesterase-3 precursor, putative, expressed
LOC_Os08g34920OsAffx.29518.1.S1_at11/118+21854331..21857002hypothetical protein
LOC_Os08g34930OsAffx.6026.1.S1_at11/118+21858873..21859433hypothetical protein
LOC_Os08g34940NANA8+21866134..21866391hypothetical protein
LOC_Os08g34950Os.27526.1.S1_s_at11/118+21868685..21879039phosphatidylinositol-4-phosphate 5-kinase family protein, putative, expressed
LOC_Os08g34950Os.53739.1.S1_x_at11/118+21868685..21879039phosphatidylinositol-4-phosphate 5-kinase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0030599molecular_functionpectinesterase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20317.1.S1_at--111--7431Chr08:21848260..21848284 (25 bp)
GTGTTCATGCAGTCGTACATCGGCG
LOC_Os08g34900
Os.20317.1.S1_at--240--6091Chr08:21848353..21848377 (25 bp)
GAGTACATGAACACCGGGCCCGGCG
LOC_Os08g34900
Os.20317.1.S1_at--68--10531Chr08:21848446..21848470 (25 bp)
TTCACCGTCGCTCAGTTCATCGAGG
LOC_Os08g34900
Os.20317.1.S1_at--635--6131Chr08:21848467..21848491 (25 bp)
GAGGGCAACATGTGGCTGCCGCCAA
LOC_Os08g34900
Os.20317.1.S1_at--436--8431Chr08:21848512..21848536 (25 bp)
GGCCTCACGTCTTGATCACCAATTC
LOC_Os08g34900
Os.20317.1.S1_at--881--1731Chr08:21848537..21848561 (25 bp)
ACCATCGAGTACGTGCTTCTTGTGT
LOC_Os08g34900
Os.20317.1.S1_at--1145--1891Chr08:21848547..21848571 (25 bp)
ACGTGCTTCTTGTGTGCGACAGTAG
LOC_Os08g34900
Os.20317.1.S1_at--1070--4591Chr08:21848562..21848586 (25 bp)
GCGACAGTAGTACAGCACATGATCA
LOC_Os08g34900
Os.20317.1.S1_at--488--2151Chr08:21848573..21848597 (25 bp)
ACAGCACATGATCATACTACACTTT
LOC_Os08g34900
Os.20317.1.S1_at--696--8211Chr08:21848649..21848673 (25 bp)
GGAATTATGGCATTCTGGGAGCTAT
LOC_Os08g34900
Os.20317.1.S1_at--503--7491Chr08:21848689..21848713 (25 bp)
GTGGTTAATGGAACAAGTTTGCCTT
LOC_Os08g34900
Target Sequence 
GTGTTCATGCAGTCGTACATCGGCGCCGTGGTGCGCCCCNGAGGGGTGGCTGGCNTGGNACGGACAGTTCGCGCTCGACA
CGCTCTACTACGGCGAGTACATGAACACCGGGCCCGGCGCCGGCGTCGGCGGCAGGGTCAAGTGGCCGGGGTTCCACGTC
ATNNGACGAGCCCCGCNCAGGCCGGCAACTTCACCGTCGCTCAGTTCATCGAGGGCAACATGTGGCTGCCGCCAACCGGC
GTCAAGTACACCGCCGGCCTCACGTCTTGATCACCAATTCACCATCGAGTACGTGCTTCTTGTGTGCGACAGTAGTACAG
CACATGATCATACTACACTTTNCACTACGTTGGAGGGAGGTTTAATTAAGGATCTGGTGTATAAAATCTTTAGGAATTAT
GGCATTCTGGGAGCTATNTANCTGTTTAATTGGTGGTTAATGGAACAAGTTTGCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20317.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis