Browse Element(s) Details


OsAffx.17337.1.S1_at

Description tigr:9636.m03500
TID=OsAffx.17337.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3488011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g34850Os.21363.1.S1_at10/118+21787690..21799814hypothetical protein
LOC_Os08g34850OsAffx.25854.1.S1_at5/118+21787690..21799814hypothetical protein
LOC_Os08g34850OsAffx.27864.4.S1_x_at1/118+21787690..21799814hypothetical protein
LOC_Os08g34860NANA8+21802898..21805298F-box domain containing protein
LOC_Os08g34870Os.51544.1.S1_at9/118+21810502..21811654hypothetical protein
LOC_Os08g34870OsAffx.6024.1.S1_at7/118+21810502..21811654hypothetical protein
LOC_Os08g34880OsAffx.17337.1.S1_at11/118+21818078..21820424expressed protein
LOC_Os08g34890NANA8+21834571..21836926F-box domain containing protein
LOC_Os08g34900Os.20317.1.S1_at11/118+21845226..21848724Pectinesterase PPE8B precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17337.1.S1_at--958--1691Chr08:21818203..21818227 (25 bp)
AGCCACCCAGAGAAGCAGAGCTCGA
LOC_Os08g34880
OsAffx.17337.1.S1_at--129--571Chr08:21818286..21818415 (25 bp)
ATCCTCGTCCGTCTGAGCGGAGCAA
LOC_Os08g34880
OsAffx.17337.1.S1_at--508--4611Chr08:21818425..21818449 (25 bp)
GCGACGCGCCGCAGCATAAGCCAAT
LOC_Os08g34880
OsAffx.17337.1.S1_at--653--5051Chr08:21818435..21818459 (25 bp)
GCAGCATAAGCCAATCGAGTGCCCG
LOC_Os08g34880
OsAffx.17337.1.S1_at--775--3031Chr08:21818447..21818471 (25 bp)
AATCGAGTGCCCGAAATGCCACGGG
LOC_Os08g34880
OsAffx.17337.1.S1_at--543--1811Chr08:21818481..21818505 (25 bp)
ACCCGGCGCGAGTTCGTGAATCATA
LOC_Os08g34880
OsAffx.17337.1.S1_at--41--6711Chr08:21818492..21818516 (25 bp)
GTTCGTGAATCATAAGTGCTCCAAC
LOC_Os08g34880
OsAffx.17337.1.S1_at--1062--351Chr08:21818503..21818527 (25 bp)
ATAAGTGCTCCAACACTCGTCTATT
LOC_Os08g34880
OsAffx.17337.1.S1_at--1127--1991Chr08:21818517..21818541 (25 bp)
ACTCGTCTATTCATGCTCGCCCAGG
LOC_Os08g34880
OsAffx.17337.1.S1_at--446--2951Chr08:21818547..21818571 (25 bp)
AAGGCCGCTAAGAAAGCAGTCCTGA
LOC_Os08g34880
OsAffx.17337.1.S1_at--142--5571Chr08:21818558..21818822 (25 bp)
GAAAGCAGTCCTGAAGCAGATATAT
LOC_Os08g34880
Target Sequence 
AGCCACCCAGAGAAGCAGAGCTCGACGACGCCGCCGCCGCCGCCACCGCCCTCCTCCAGACTCCAGTCCTCCCCCCGTCC
TCCATCCTCGTCCGTCTGAGCGGAGCAATGGCGGGAGGCGACGCGCCGCAGCATAAGCCAATCGAGTGCCCGAAATGCCA
CGGGGTGTTCAACACCCGGCGCGAGTTCGTGAATCATAAGTGCTCCAACACTCGTCTATTCATGCTCGCCCAGGCCAAGA
AGGCCGCTAAGAAAGCAGTCCTGAAGCAGATATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17337.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis