Browse Element(s) Details


Os.28873.2.A1_at

Description gb:NM_184800.1
DB_XREF= gi:34896689
TID=Os.28873.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.28873 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0087M10.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0087M10.12), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4006011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g40014NANA3+22185106..22186086NA
LOC_Os03g40020Os.45095.1.S1_at11/113+22187895..22193521DEAD/DEAH box helicase family protein, putative, expressed
LOC_Os03g40020Os.53366.1.S1_x_at4/113+22187895..22193521DEAD/DEAH box helicase family protein, putative, expressed
LOC_Os03g40030OsAffx.22692.1.S1_at11/113+22194083..22194613hypothetical protein
LOC_Os03g40030OsAffx.22692.1.S1_x_at11/113+22194083..22194613hypothetical protein
LOC_Os03g40040Os.30589.1.S1_at11/113+22197814..22199276expressed protein
LOC_Os03g40060Os.28873.2.A1_at11/113+22208198..22209514hypothetical protein
LOC_Os03g40070Os.52824.1.S1_at11/113+22209847..22213778transposon protein, putative, unclassified, expressed
LOC_Os03g40080OsAffx.25445.1.S1_at5/113+22217138..22221790GRAS family transcription factor containing protein, expressed
LOC_Os03g40084NANA3+22223436..22224648hypothetical protein
LOC_Os03g40090OsAffx.22693.1.S1_x_at11/113+22225901..22227021hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28873.2.A1_at--19--972Chr12:17806158..17806182 (25 bp)
AGGACGGATGTGAACCTCGCCGTTC
NONE
Os.28873.2.A1_at--323--9951Chr03:22209256..22209280 (25 bp)
TACGCGCTGCGAATACAGTTGTCTG
LOC_Os03g40060
Os.28873.2.A1_at--884--5271Chr03:22209283..22209307 (25 bp)
GAATGTGCACATTACAGGGTACAAA
LOC_Os03g40060
Os.28873.2.A1_at--993--6591Chr03:22209322..22209346 (25 bp)
GATTGAGTTTCTTCTGCACATAGTG
LOC_Os03g40060
Os.28873.2.A1_at--1147--5091Chr03:22209337..22209361 (25 bp)
GCACATAGTGGAAAACGCCCCTACA
LOC_Os03g40060
Os.28873.2.A1_at--543--9811Chr03:22209358..22209382 (25 bp)
TACACTGGAGGCATTGACCGTAGAC
LOC_Os03g40060
Os.28873.2.A1_at--102--5831Chr03:22209373..22209397 (25 bp)
GACCGTAGACACAACTCAGGTACTA
LOC_Os03g40060
Os.28873.2.A1_at--269--10131Chr03:22209398..22209422 (25 bp)
TATGAAGATTATTATGGCGCCAGAA
LOC_Os03g40060
Os.28873.2.A1_at--520--4391Chr03:22209416..22209440 (25 bp)
GCCAGAATTGGCAGCAAGTTCTCCG
LOC_Os03g40060
Os.28873.2.A1_at--1148--2811Chr03:22209431..22209455 (25 bp)
AAGTTCTCCGAGTGTTTTGCTGTAG
LOC_Os03g40060
Os.28873.2.A1_at--688--9871Chr03:22209453..22209477 (25 bp)
TAGTTTCTAGGGATTTTCTCCGTAG
LOC_Os03g40060
Target Sequence 
AGGACGGATGTGAACCTCGCCGTTCCGGCGCCGGCACGGTGCAGCACCCGTCAGCAGGGGAAGGGGGGATGCGGGGCGGT
GGGGGGCGGGCGCGTTACGCGCGTAGGAGGCGGCGGCGGCGATGCGGCCCGCTTCCTCGGCAACGACGACGGCTCCGGCG
GGAGGCGGCGGCCACAGGCGATCCGAGGCAGCGGCGGGTTTGGTGGCAATGATAAGATATGGTTTGCAGACCAGGGGCCT
GGTATGCCGCAGCTTACGCGCTGCGAATACAGTTGTCTGAAGAATGTGCACATTACAGGGTACAAAGGGGCGAGATGCCA
GATTGAGTTTCTTCTGCACATAGTGGAAAACGCCCCTACACTGGAGGCATTGACCGTAGACACAACTCAGGTACTATATG
AAGATTATTATGGCGCCAGAATTGGCAGCAAGTTCTCCGAGTGTTTTGCTGTAGTTTCTAGGGATTTTCTCCGTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28873.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis