Browse Element(s) Details


OsAffx.25445.1.S1_at

Description tigr:9631.m03856
TID=OsAffx.25445.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g400805/11GRAS family transcription factor containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g40020Os.45095.1.S1_at11/113+22187895..22193521DEAD/DEAH box helicase family protein, putative, expressed
LOC_Os03g40020Os.53366.1.S1_x_at4/113+22187895..22193521DEAD/DEAH box helicase family protein, putative, expressed
LOC_Os03g40030OsAffx.22692.1.S1_at11/113+22194083..22194613hypothetical protein
LOC_Os03g40030OsAffx.22692.1.S1_x_at11/113+22194083..22194613hypothetical protein
LOC_Os03g40040Os.30589.1.S1_at11/113+22197814..22199276expressed protein
LOC_Os03g40060Os.28873.2.A1_at11/113+22208198..22209514hypothetical protein
LOC_Os03g40070Os.52824.1.S1_at11/113+22209847..22213778transposon protein, putative, unclassified, expressed
LOC_Os03g40080OsAffx.25445.1.S1_at5/113+22217138..22221790GRAS family transcription factor containing protein, expressed
LOC_Os03g40084NANA3+22223436..22224648hypothetical protein
LOC_Os03g40090OsAffx.22693.1.S1_x_at11/113+22225901..22227021hypothetical protein
LOC_Os03g40100Os.8785.1.S1_at11/113+22236313..22239261ACT domain containing protein, putative, expressed
LOC_Os03g40110Os.20699.2.S1_x_at11/113+22240343..22247189Nop14-like family protein, expressed
LOC_Os03g40110Os.20699.1.S1_at11/113+22240343..22247189Nop14-like family protein, expressed
LOC_Os03g40110Os.23213.1.S1_at1/113+22240343..22247189Nop14-like family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25445.1.S1_at--655--5091Chr03:22221385..22221409 (25 bp)
GCACCCACCTGAAGCTGAAGGTACA
LOC_Os03g40080
OsAffx.25445.1.S1_at--1057--6091Chr03:22221435..22221459 (25 bp)
GAGTCTATAGAGACTGTTCTCTTAA
LOC_Os03g40080
OsAffx.25445.1.S1_at--871--6711Chr03:22221450..22221474 (25 bp)
GTTCTCTTAACAATAGAGGGCCACT
LOC_Os03g40080
OsAffx.25445.1.S1_at--992--1331Chr03:22221464..22221488 (25 bp)
AGAGGGCCACTATGCAACGGAATCC
LOC_Os03g40080
OsAffx.25445.1.S1_at--1130--1751Chr03:22221643..22221664 (22 bp)
ACCGGTATCAGATGACTTCTACCAC
LOC_Os03g40080
OsAffx.25445.1.S1_at--628--6371Chr03:22221758..22221926 (25 bp)
GATACCTACCGGATATCAGCGTCCT
NONE
OsAffx.25445.1.S1_at--173--3551Chr03:22222077..22222101 (25 bp)
CATCGCGTCGCGTCGAAGCTCGTTG
NONE
OsAffx.25445.1.S1_at--873--2691Chr03:22222092..22222116 (25 bp)
AAGCTCGTTGCCAGAGGCTGCGTCC
NONE
OsAffx.25445.1.S1_at--147--8091Chr03:22222169..22222193 (25 bp)
GGAGCTCGTCACTGGAGGCTGCATC
NONE
OsAffx.25445.1.S1_at--824--1572Chr08:21250928..21251079 (25 bp)
AGCTCATCGTCGGAGGTTGCATCCT
NONE
OsAffx.25445.1.S1_at--97--8091Chr03:22222271..22222295 (25 bp)
GGAGCTCATCGCTTGAGACTGCGTC
NONE
Target Sequence 
GCACCCACCTGAAGCTGAAGGTACATACTGGAGTGGAGTGGAGTCTGATAGAGTCTATAGAGACTGTTCTCTTAACAATA
GAGGGCCACTATGCAACGGAATCCCGTTTTTAAACGGGATGATACCGGTATCAGATGACTTCTACCACGTATCAGGTGAT
ACTCGTGAGATATCATGTGATACCTATCAGGTATTAGACGATTTCTACCACGTATCGGGTGATACTTACGAGATATCAGA
TGATACCTACCGGATATCAGCGTCCTCCGCCGCCATGCGCCACGCCGGGCTCGTCGCTAGCGGCCACGTCCTCCGTTGTC
CATGCATCGCGTCGCGTCGAAGCTCGTTGCCAGAGGCTGCGTCCTCTGCCATCCATAGCCACGCCACGCCGGGAGCTCGT
CGCCGGCGGCCACGCCGGAGCTCGTCACTGGAGGCTGCATCCTCCGCCGTCCATAGCCATGCGCCGGAGCTCATCGTCGG
AGGTTGCATCCTCCGTCGTCCACAACCATGCCACGCCGGGAGCTCATCGCTTGAGACTGCGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25445.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis