Browse Element(s) Details


Os.8785.1.S1_at

Description gb:AK071010.1
DB_XREF= gi:32981033
TID=Os.8785.1
CNT=24
FEA=FLmRNA
TIER=FL+Stack
STK=11
UG=Os.8785 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1523_A02.3 (OJ1523_A02.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023080P13, full insert sequence.
FL= gb:AK071010.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4010011/11ACT domain containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g40070Os.52824.1.S1_at11/113+22209847..22213778transposon protein, putative, unclassified, expressed
LOC_Os03g40080OsAffx.25445.1.S1_at5/113+22217138..22221790GRAS family transcription factor containing protein, expressed
LOC_Os03g40084NANA3+22223436..22224648hypothetical protein
LOC_Os03g40090OsAffx.22693.1.S1_x_at11/113+22225901..22227021hypothetical protein
LOC_Os03g40100Os.8785.1.S1_at11/113+22236313..22239261ACT domain containing protein, putative, expressed
LOC_Os03g40110Os.20699.2.S1_x_at11/113+22240343..22247189Nop14-like family protein, expressed
LOC_Os03g40110Os.20699.1.S1_at11/113+22240343..22247189Nop14-like family protein, expressed
LOC_Os03g40110Os.23213.1.S1_at1/113+22240343..22247189Nop14-like family protein, expressed
LOC_Os03g40120NANA3+22249998..22250516hypothetical protein
LOC_Os03g40130OsAffx.25446.1.S1_at11/113+22253199..22254759universal stress protein family protein

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Gene Ontology Classification
GO idTypeName
GO:0006521biological_processregulation of amino acid metabolism
GO:0009735biological_processresponse to cytokinin stimulus
GO:0005829cellular_componentcytosol
GO:0016597molecular_functionamino acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8785.1.S1_at--930--2191Chr03:22238664..22238688 (25 bp)
ACAAATGACAAGGTCGGCCTCCTGT
LOC_Os03g40100
Os.8785.1.S1_at--486--5311Chr03:22238755..22238779 (25 bp)
GAAGGATGGCTGTCAACACATTCTA
LOC_Os03g40100
Os.8785.1.S1_at--1092--2071Chr03:22238772..22238796 (25 bp)
ACATTCTATGTTCGCGATTCCACAG
LOC_Os03g40100
Os.8785.1.S1_at--678--291Chr03:22238820..22238844 (25 bp)
ATAGACTCCATCAGGCAAGCCATAG
LOC_Os03g40100
Os.8785.1.S1_at--302--5571Chr03:22238894..22238918 (25 bp)
GAAAGAGTCACCCACATGGTTCCTC
LOC_Os03g40100
Os.8785.1.S1_at--299--10651Chr03:22238919..22238943 (25 bp)
TTCGCCAACCTGTTTCGACCGAGAT
LOC_Os03g40100
Os.8785.1.S1_at--769--4071Chr03:22238938..22238962 (25 bp)
CGAGATCTCTCTACAGTTTCGGGAT
LOC_Os03g40100
Os.8785.1.S1_at--1088--1191Chr03:22238952..22238976 (25 bp)
AGTTTCGGGATGTTCATGCGCTGAT
LOC_Os03g40100
Os.8785.1.S1_at--366--611Chr03:22238967..22238991 (25 bp)
ATGCGCTGATCTCATGAGCCGATCC
LOC_Os03g40100
Os.8785.1.S1_at--104--2151Chr03:22239048..22239072 (25 bp)
ACAGAGAGGGCCTTCATTCTGTTCA
LOC_Os03g40100
Os.8785.1.S1_at--383--5211Chr03:22239154..22239178 (25 bp)
GAATTCGCCATGTCCACATTGTACA
LOC_Os03g40100
Target Sequence 
ACAAATGACAAGGTCGGCCTCCTGTCAGAGGTCACCCGAATCTTCCGCGAGAACAGCCTGACTGTCACAAGAGCGGAGGT
GAGCACGAGAGGAAGGATGGCTGTCAACACATTCTATGTTCGCGATTCCACAGGAGGGACGGTTGATCAGAAGACAATAG
ACTCCATCAGGCAAGCCATAGGCCAGAACATTCAGGTGAAAGGCCAGCCTGAGCCATCAGAGCCACAGAAGAAAGAGTCA
CCCACATGGTTCCTCTTCGCCAACCTGTTTCGACCGAGATCTCTCTACAGTTTCGGGATGTTCATGCGCTGATCTCATGA
GCCGATCCCGAAAACCGCACTGAAAATTCTTAGCTGACGAAGAGGCCCAAGAATTCAGGAAGTTACAGAGAGGGCCTTCA
TTCTGTTCAAGACTTACCAGTGGAGTGGCGCAGGAATGGAATAGTAGTGTAGGGGTTGTTTATAGATCATCATCATTTGT
AAATATACTCGAATTCGCCATGTCCACATTGTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8785.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis