Browse Element(s) Details


Os.29008.1.S1_x_at

Description gb:AK110770.1
DB_XREF= gi:32995979
TID=Os.29008.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.29008 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Lycopersicon esculentum resistance complex protein I2C-2 like protein (P0509B06.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-171-A10, full insert sequence.
FL= gb:AK110770.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0837011/11symbiosis-related disease resistance protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08330NANA1+4078118..4079482Eukaryotic aspartyl protease family protein
LOC_Os01g08340Os.54294.1.S1_at11/111+4087875..4091623zinc finger family protein, putative, expressed
LOC_Os01g08350NANA1+4092658..4093051ATP synthase alpha chain, mitochondrial, putative
LOC_Os01g08360OsAffx.10833.1.S1_at5/111+4096185..4098684hypothetical protein
LOC_Os01g08370Os.29008.1.S1_at11/111+4103630..4105343symbiosis-related disease resistance protein, putative, expressed
LOC_Os01g08370Os.29008.1.S1_x_at11/111+4103630..4105343symbiosis-related disease resistance protein, putative, expressed
LOC_Os01g08370Os.29008.2.S1_at7/111+4103630..4105343symbiosis-related disease resistance protein, putative, expressed
LOC_Os01g08380OsAffx.9719.1.S1_x_at11/111+4107492..4108805Transferase family protein, expressed
LOC_Os01g08390OsAffx.10964.1.S1_at11/111+4113253..4113745hypothetical protein
LOC_Os01g08400Os.31960.1.S1_at11/111+4114843..4119183Syntaxin 32, putative, expressed
LOC_Os01g08410Os.12810.2.S1_x_at11/111+4120222..4123159expressed protein
LOC_Os01g08410Os.12810.1.S1_at11/111+4120222..4123159expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.29008.1.S1_x_at--1150--6191Chr01:4104777..4104801 (25 bp)
GAGGCAGAGGGATCACATCTCAGAA
LOC_Os01g08370
Os.29008.1.S1_x_at--646--2091Chr01:4104791..4104815 (25 bp)
ACATCTCAGAATTACTGCCTCACTG
LOC_Os01g08370
Os.29008.1.S1_x_at--740--6531Chr01:4104834..4104858 (25 bp)
GATTTATCATTCCTTACCATGCCAA
LOC_Os01g08370
Os.29008.1.S1_x_at--212--10251Chr01:4104859..4104883 (25 bp)
TTTGTAGGACACTTGGGTATCTTCA
LOC_Os01g08370
Os.29008.1.S1_x_at--962--6591Chr01:4104893..4104917 (25 bp)
GATTGACACGGATCAGCAAACCATA
LOC_Os01g08370
Os.29008.1.S1_x_at--37--1491Chr01:4104907..4104931 (25 bp)
AGCAAACCATATGCCTAACTCCAGA
LOC_Os01g08370
Os.29008.1.S1_x_at--119--1131Chr01:4104981..4105005 (25 bp)
AGTGAATGCTCATATCTCCGCTCAT
LOC_Os01g08370
Os.29008.1.S1_x_at--25--7471Chr01:4105058..4105082 (25 bp)
GTGTGAGAGCATAGACTCCCTACCA
LOC_Os01g08370
Os.29008.1.S1_x_at--1079--5311Chr01:4105155..4105179 (25 bp)
GAAGGTGGGATTGACCAGCACAAAA
LOC_Os01g08370
Os.29008.1.S1_x_at--259--5131Chr01:4105172..4105196 (25 bp)
GCACAAAATCGCACATGTCAGGGAA
LOC_Os01g08370
Os.29008.1.S1_x_at--68--10391Chr01:4105306..4105330 (25 bp)
TTTTCTGTGCTCATATTTACTAGGA
LOC_Os01g08370
Target Sequence 
GAGGCAGAGGGATCACATCTCAGAATTACTGCCTCACTGAAAAGACTGCATATTGATGATTTATCATTCCTTACCATGCC
AATTTGTAGGACACTTGGGTATCTTCAATATTTGATGATTGACACGGATCAGCAAACCATATGCCTAACTCCAGAGCAGG
AGCAAGCATTTGGTACACTGACTTCATTGAAAACACTCGTGTTCAGTGAATGCTCATATCTCCGCTCATTGCCNTGCAAC
GCTGCACCAGATTTCCTCCCNTGAAGANGCCTGCANTTTATCATCGTGTGAGAGCATAGACTCCCTACCACACCTGGGAT
TGCCAGGATCACTNGAAAGGTTGTTCATNGCNGGATGTGACCTGTTGAGAGACAAGTGCGTAGAAGGTGGGATTGACCAG
CACAAAATCGCACATGTCAGGGAAACAATTTTGGCATANCATNGATTTCTCCAATGACCTCTAACAAATGTAGTGAGTAG
TGACTACTGGTTTGATATGTTTACTTTCAGTAATAAANCAACTCTATAATTTTTTTTCTGTGCTCATATTTACTAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.29008.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis