Browse Element(s) Details


Os.29008.2.S1_at

Description gb:NM_189532.1
DB_XREF= gi:34906147
GEN=P0509B06.11
TID=Os.29008.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.29008 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) Lycopersicon esculentum resistance complex protein I2C-2 like protein (P0509B06.11), mRNA.
PROD=Lycopersicon esculentum resistance complexprotein I2C-2 like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g083707/11symbiosis-related disease resistance protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08330NANA1+4078118..4079482Eukaryotic aspartyl protease family protein
LOC_Os01g08340Os.54294.1.S1_at11/111+4087875..4091623zinc finger family protein, putative, expressed
LOC_Os01g08350NANA1+4092658..4093051ATP synthase alpha chain, mitochondrial, putative
LOC_Os01g08360OsAffx.10833.1.S1_at5/111+4096185..4098684hypothetical protein
LOC_Os01g08370Os.29008.1.S1_at11/111+4103630..4105343symbiosis-related disease resistance protein, putative, expressed
LOC_Os01g08370Os.29008.1.S1_x_at11/111+4103630..4105343symbiosis-related disease resistance protein, putative, expressed
LOC_Os01g08370Os.29008.2.S1_at7/111+4103630..4105343symbiosis-related disease resistance protein, putative, expressed
LOC_Os01g08380OsAffx.9719.1.S1_x_at11/111+4107492..4108805Transferase family protein, expressed
LOC_Os01g08390OsAffx.10964.1.S1_at11/111+4113253..4113745hypothetical protein
LOC_Os01g08400Os.31960.1.S1_at11/111+4114843..4119183Syntaxin 32, putative, expressed
LOC_Os01g08410Os.12810.2.S1_x_at11/111+4120222..4123159expressed protein
LOC_Os01g08410Os.12810.1.S1_at11/111+4120222..4123159expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.29008.2.S1_at--944--1711Chr01:4105021..4105045 (25 bp)
ACCAGATTTCCTCCCTGAAGAGCCT
LOC_Os01g08370
Os.29008.2.S1_at--123--211Chr01:4105026..4105050 (25 bp)
ATTTCCTCCCTGAAGAGCCTGCATT
LOC_Os01g08370
Os.29008.2.S1_at--542--9311Chr01:4105032..4105056 (25 bp)
TCCCTGAAGAGCCTGCATTTATCAT
LOC_Os01g08370
Os.29008.2.S1_at--259--5371Chr01:4105037..4105061 (25 bp)
GAAGAGCCTGCATTTATCATCGTGT
LOC_Os01g08370
Os.29008.2.S1_at--454--1371Chr01:4105039..4105063 (25 bp)
AGAGCCTGCATTTATCATCGTGTGA
LOC_Os01g08370
Os.29008.2.S1_at--417--9691Chr01:4105101..4105125 (25 bp)
TCACTGGAAAGGTTGTTCATTGCTG
LOC_Os01g08370
Os.29008.2.S1_at--252--3211Chr01:4105145..4105339 (25 bp)
CAAGTGCGTAGAAGGAGTATTTCAG
LOC_Os01g08370
Os.29008.2.S1_at--713--8791Chr01:4105439..4105463 (25 bp)
TGTTCAGAAGAACGCAGATTTCCAT
NONE
Os.29008.2.S1_at--1120--1431Chr01:4105447..4105471 (25 bp)
AGAACGCAGATTTCCATATATCGAA
NONE
Os.29008.2.S1_at--693--5031Chr01:4105452..4105476 (25 bp)
GCAGATTTCCATATATCGAAAAGGA
NONE
Os.29008.2.S1_at--148--4091Chr01:4105468..4105492 (25 bp)
CGAAAAGGATGAAAGAACTAGCCAA
NONE
Target Sequence 
ACCAGATTTCCTCCCTGAAGAGCCTGCATTTATCATCGTGTGAGAGCATAGACTCCCTACCACACCTGGGATTGCCAGGA
TCACTGGAAAGGTTGTTCATTGCTGGATGTGACCTGTTGAGAGACAAGTGCGTAGAAGGAGTATTTCAGGTTGTGCAGTG
TAATGTGTTCTTGTCCAGATACATCTTCGATGTGAGGCTATATTCAGTTCTATCATCGAAAACAAAATACAGTATGTGCA
CTTCACTTTGTTCAGAAGAACGCAGATTTCCATATATCGAAAAGGATGAAAGAACTAGCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.29008.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis