Browse Element(s) Details


Os.30589.1.S1_at

Description gb:AK108626.1
DB_XREF= gi:32993835
TID=Os.30589.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30589 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0087M10.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-147-E03, full insert sequence.
FL= gb:AK108626.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4004011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g40010Os.11763.1.S1_at10/113+22173892..22181813expressed protein
LOC_Os03g40014NANA3+22185106..22186086NA
LOC_Os03g40020Os.45095.1.S1_at11/113+22187895..22193521DEAD/DEAH box helicase family protein, putative, expressed
LOC_Os03g40020Os.53366.1.S1_x_at4/113+22187895..22193521DEAD/DEAH box helicase family protein, putative, expressed
LOC_Os03g40030OsAffx.22692.1.S1_at11/113+22194083..22194613hypothetical protein
LOC_Os03g40030OsAffx.22692.1.S1_x_at11/113+22194083..22194613hypothetical protein
LOC_Os03g40040Os.30589.1.S1_at11/113+22197814..22199276expressed protein
LOC_Os03g40060Os.28873.2.A1_at11/113+22208198..22209514hypothetical protein
LOC_Os03g40070Os.52824.1.S1_at11/113+22209847..22213778transposon protein, putative, unclassified, expressed
LOC_Os03g40080OsAffx.25445.1.S1_at5/113+22217138..22221790GRAS family transcription factor containing protein, expressed
LOC_Os03g40084NANA3+22223436..22224648hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30589.1.S1_at--1025--4251Chr03:22198278..22198302 (25 bp)
CCTGGGCTCCCTAGAACAAGGACGA
LOC_Os03g40040
Os.30589.1.S1_at--131--8111Chr03:22198259..22198283 (25 bp)
GGACGAGGAGGCTACACCATCACCT
LOC_Os03g40040
Os.30589.1.S1_at--654--5891Chr03:22198185..22198209 (25 bp)
GAGCTGGAGCAAAGACTTCGCGATC
LOC_Os03g40040
Os.30589.1.S1_at--1148--6371Chr03:22198164..22198188 (25 bp)
GATCGCGTCCGACGAGATTCTTCGG
LOC_Os03g40040
Os.30589.1.S1_at--622--1251Chr03:22198150..22198174 (25 bp)
AGATTCTTCGGTCCTTCGAGGGCGC
LOC_Os03g40040
Os.30589.1.S1_at--211--5911Chr03:22198121..22198145 (25 bp)
GAGCTCGAGCCTCGTGAGGTTCTCC
LOC_Os03g40040
Os.30589.1.S1_at--1023--8791Chr03:22198096..22198120 (25 bp)
TGTTCCCTACCGTGAGCATGGACAC
LOC_Os03g40040
Os.30589.1.S1_at--988--831Chr03:22198079..22198103 (25 bp)
ATGGACACGCCGAGCGTCATGCACT
LOC_Os03g40040
Os.30589.1.S1_at--347--3831Chr03:22198047..22198071 (25 bp)
CTGCGACTACGACCGCATGATCAGG
LOC_Os03g40040
Os.30589.1.S1_at--677--2811Chr03:22197989..22198013 (25 bp)
AAGATAGTGTTGTCGGTTGTTCCAT
LOC_Os03g40040
Os.30589.1.S1_at--496--7071Chr03:22197920..22197944 (25 bp)
GTCAGGGCGAAGTCGGGCTATCCCC
LOC_Os03g40040
Target Sequence 
CCTGGGCTCCCTAGAACAAGGACGAGGAGGCTACACCATCACCTGCCACACTCTGAGGTCGACGTTAGGGGCGGCCGCCA
TTGATGACGAGTGGAGCTGGAGCAAAGACTTCGCGATCGCGTCCGACGAGATTCTTCGGTCCTTCGAGGGCGCCCCCGAG
CTCGAGCCTCGTGAGGTTCTCCTGTTCCCTACCGTGAGCATGGACACGCCGAGCGTCATGCACTTCCTCACCTGCGACTA
CGACCGCATGATCAGGAAGATGTCGGTGGTGACCATTGACATAGCCAGCAAGATAGTGTTGTCGGTTGTTCCATATGTTA
ACGGGGAGGAGGACCTTTCCGGTGAGGATGCCGACATGGTCAGGGCGAAGTCGGGCTATCCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30589.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis