CREP Browser

Os.3105.1.S1_at

Description

gb:AU086009
DB_XREF= gi:7332663
DB_XREF=AU086009
CLONE=S11014
TID=Os.3105.1
CNT=6
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.3105 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative transcription factor (OSJNBa0093B11.2), mRNA
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os10g33940	11/11	Auxin response factor 16, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os10g33930	Os.3107.1.S1_at	11/11	10	+	17707155..17711418	pleckstrin homology domain-containing protein, putative, expressed
LOC_Os10g33940	Os.3105.1.S1_at	11/11	10	+	17721100..17727519	Auxin response factor 16, putative, expressed
LOC_Os10g33950	Os.46808.2.S1_x_at	8/11	10	+	17733044..17734149	hypothetical protein
LOC_Os10g33952	NA	NA	10	+	17748315..17748492	NA
LOC_Os10g33954	NA	NA	10	+	17751297..17751602	hypothetical protein

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Gene Ontology Classification

GO id	Type	Name
GO:0006355	biological_process	regulation of transcription, DNA-dependent
GO:0007389	biological_process	pattern specification
GO:0009733	biological_process	response to auxin stimulus
GO:0009850	biological_process	auxin metabolism
GO:0009908	biological_process	flower development
GO:0010158	biological_process	abaxial cell fate specification
GO:0045449	biological_process	regulation of transcription
GO:0051301	biological_process	cell division
GO:0005634	cellular_component	nucleus
GO:0003677	molecular_function	DNA binding
GO:0003700	molecular_function	transcription factor activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.3105.1.S1_at--213--389	1	Chr10:17726983..17727007 (25 bp)	CTGGTGTAGTCAAGCATCCGGGTGA	LOC_Os10g33940
Os.3105.1.S1_at--177--739	1	Chr10:17727004..17727136 (25 bp)	GTGAGGTACCATTCAGTGACTTCAT	LOC_Os10g33940
Os.3105.1.S1_at--433--601	1	Chr10:17727186..17727210 (25 bp)	GAGAGACCTCTCATCGAATGCTTAG	LOC_Os10g33940
Os.3105.1.S1_at--183--141	1	Chr10:17727281..17727305 (25 bp)	AGACTTCCTTTGTTACATGTACTTG	LOC_Os10g33940
Os.3105.1.S1_at--599--351	1	Chr10:17727296..17727320 (25 bp)	CATGTACTTGCGTTGGGCTGTTAAC	LOC_Os10g33940
Os.3105.1.S1_at--355--505	1	Chr10:17727324..17727348 (25 bp)	GCAGACCTGCTTTGTATTGTCAGTG	LOC_Os10g33940
Os.3105.1.S1_at--109--5	1	Chr10:17727339..17727363 (25 bp)	ATTGTCAGTGTTGTGGATTGCTCAA	LOC_Os10g33940
Os.3105.1.S1_at--637--867	1	Chr10:17727371..17727395 (25 bp)	TGTGTGTGTTTTTATCTTGCCTCGG	LOC_Os10g33940
Os.3105.1.S1_at--611--43	1	Chr10:17727384..17727408 (25 bp)	ATCTTGCCTCGGTTAGCTGTCAGTT	LOC_Os10g33940
Os.3105.1.S1_at--814--473	1	Chr10:17727399..17727423 (25 bp)	GCTGTCAGTTTCTTTGTTGCAATCA	LOC_Os10g33940
Os.3105.1.S1_at--72--1075	1	Chr10:17727415..17727439 (25 bp)	TTGCAATCAGTGGTCATGTTCTTCT	LOC_Os10g33940

Target Sequence

CTGGTGTAGTCAAGCATCCGGGTGAGGTACCATTCAGTGACTTCATGAAANCGGCACGGAGGCTTACAATAATAGCCNGG
CGACAGGGAGAGAATTGAGAGACCTCTCATCGAATGCTTAGTTGANCAGGCGTGATAGTTCAATAAACTCCCGTTTGAAT
TTAATTCTGAAATATGAATCGTAGCGTGAAAAGACTTCCTTTGTTACATGTACTTGCGTTGGGCTGTTAACTAAGCAGAC
CTGCTTTGTATTGTCAGTGTTGTGGATTGCTCAAGTTAAGGTGTGTGTGTTTTTATCTTGCCTCGGTTAGCTGTCAGTTT
CTTTGTTGCAATCAGTGGTCATGTTCTTCT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis

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