Browse Element(s) Details


Os.31128.1.S1_x_at

Description gb:AK107799.1
DB_XREF= gi:32993008
TID=Os.31128.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31128 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1529_G03.6 (OJ1529_G03.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-133-E01, full insert sequence.
FL= gb:AK107799.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6035011/11expressed protein
LOC_Os09g367702/11C2 domain-containing protein, putative, expressed
LOC_Os01g603401/11C2 domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g60290Os.51620.1.S1_at11/111+35212197..35215541expressed protein
LOC_Os01g60310NANA1+35217538..35218707hypothetical protein
LOC_Os01g60330OsAffx.9457.1.S1_at11/111+35226005..35228563Protein kinase domain containing protein, expressed
LOC_Os01g60340Os.31128.1.S1_x_at1/111+35229152..35233804C2 domain containing protein
LOC_Os01g60350Os.31128.1.S1_x_at11/111+35237472..35240602expressed protein
LOC_Os01g60360NANA1+35244531..35246258Ubiquitin-conjugating enzyme E2-17 kDa, putative
LOC_Os01g60369Os.45173.1.S1_x_at3/111+35248279..35251510retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g60380NANA1+35251776..35256194retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g60389Os.45173.1.S1_x_at3/111+35257254..35260485retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g60400NANA1+35260751..35261460retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g60410Os.11479.1.S1_at11/111+35264606..35268683Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31128.1.S1_x_at--918--10291Chr01:35240371..35240395 (25 bp)
TTTCGGTTTCCCGTCGGCAAGAGAT
LOC_Os01g60350
Os.31128.1.S1_x_at--532--8231Chr01:35240356..35240380 (25 bp)
GGCAAGAGATGAATCCCACGGACAC
LOC_Os01g60350
Os.31128.1.S1_x_at--673--6171Chr01:35238810..35238833 (24 bp)
GAGGACGTCAAAGTTTGCCCACTGG
LOC_Os01g60350
Os.31128.1.S1_x_at--805--4551Chr01:35238794..35238818 (25 bp)
GCCCACTGGTGGAATATGACTCAAA
LOC_Os01g60350
Os.31128.1.S1_x_at--312--5711Chr01:35238777..35238801 (25 bp)
GACTCAAATTCTTTGGATGGCATCC
LOC_Os01g60350
Os.31128.1.S1_x_at--705--6231Chr01:35238762..35238786 (25 bp)
GATGGCATCCTTCATGAAATTCCTT
LOC_Os01g60350
Os.31128.1.S1_x_at--862--10672Chr09:21216169..21216193 (25 bp)
TTCCTTTGTGGGTCAAGAATCCTGA
LOC_Os09g36770
Os.31128.1.S1_x_at--191--5271Chr01:35238611..35238751 (25 bp)
GAATCCTGACTGTGATAGAATTGAT
LOC_Os01g60350
Os.31128.1.S1_x_at--530--10611Chr01:35238573..35238597 (25 bp)
TTCTGGAGATGATGTGGCCTTACCT
LOC_Os01g60350
Os.31128.1.S1_x_at--1094--8613Chr09:21215992..21216012 (21 bp)
TGTGGCCTTACCTCAACAAGGCTAT
LOC_Os09g36770
Os.31128.1.S1_x_at--892--2931Chr01:35238444..35238467 (24 bp)
AAGGCTATCTGCAAAACTGCACAGG
LOC_Os01g60350
Target Sequence 
TTTCGGTTTCCCGTCGGCAAGAGATGAATCCCACGGACACCACGCCATCGGCGGCCGATTCGAGACGGAGGACGTCAAAG
TTTGCCCACTGGTGGAATATGACTCAAATTCTTTGGATGGCATCCTTCATGAAATTCCTTTGTGGGTCAAGAATCCTGAC
TGTGATAGAATTGATTGGGTGAGCAGATTTCTGGAGATGATGTGGCCTTACCTCAACAAGGCTATCTGCAAAACTGCACA
GG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31128.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis