Browse Element(s) Details


Os.31563.1.S1_at

Description gb:AK107127.1
DB_XREF= gi:32992336
TID=Os.31563.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.31563 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-124-B12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-124-B12, full insert sequence.
FL= gb:AK107127.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0873011/11uroporphyrinogen-III synthase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g08680Os.52797.1.S1_at7/113+4450739..4455226Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
LOC_Os03g08680Os.19940.1.S1_s_at1/113+4450739..4455226Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
LOC_Os03g08690Os.50581.1.S1_at11/113+4458791..4460364expressed protein
LOC_Os03g08700Os.54630.1.S1_at11/113+4461999..4468617expressed protein
LOC_Os03g08710OsAffx.12788.1.S1_at11/113+4469068..4469445expressed protein
LOC_Os03g08720Os.55882.1.S1_at11/113+4471201..4473165Transferase family protein, expressed
LOC_Os03g08730Os.31563.1.S1_at11/113+4475846..4479962uroporphyrinogen-III synthase family protein, putative, expressed
LOC_Os03g08740Os.49808.1.S1_at11/113+4492515..4497652expressed protein
LOC_Os03g08740Os.49808.1.S2_at11/113+4492515..4497652expressed protein
LOC_Os03g08754OsAffx.12789.1.S1_s_at11/113+4498642..4504591SHORT VEGETATIVE PHASE protein, putative, expressed
LOC_Os03g08754Os.22281.1.S1_at8/113+4498642..4504591SHORT VEGETATIVE PHASE protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006779biological_processporphyrin biosynthesis
GO:0004852molecular_functionuroporphyrinogen-III synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31563.1.S1_at--162--231Chr03:4478757..4478781 (25 bp)
ATATTAAAGCCTGCTCTTTCAGCTC
LOC_Os03g08730
Os.31563.1.S1_at--971--3671Chr03:4478772..4478796 (25 bp)
CTTTCAGCTCCAGTTGTTGCAGTAG
LOC_Os03g08730
Os.31563.1.S1_at--113--5931Chr03:4479243..4479267 (25 bp)
GAGCTTGGCTAAATCTTGCTTCACA
LOC_Os03g08730
Os.31563.1.S1_at--891--271Chr03:4479299..4479323 (25 bp)
ATAGGCGAGACGACTGCCTCAGCAG
LOC_Os03g08730
Os.31563.1.S1_at--225--5571Chr03:4479553..4479577 (25 bp)
GAAAGCATCCTTGAAGCGCTCAGAG
LOC_Os03g08730
Os.31563.1.S1_at--191--1391Chr03:4479697..4479721 (25 bp)
AGACGGGCAATTTACTTGTACCAGA
LOC_Os03g08730
Os.31563.1.S1_at--997--7531Chr03:4479744..4479768 (25 bp)
GTGGCGGCTGCATATTGAACTCTGT
LOC_Os03g08730
Os.31563.1.S1_at--153--10751Chr03:4479758..4479782 (25 bp)
TTGAACTCTGTGCTTCCTTGACTAA
LOC_Os03g08730
Os.31563.1.S1_at--121--8911Chr03:4479776..4479800 (25 bp)
TGACTAACCGATCACACACTTTTTG
LOC_Os03g08730
Os.31563.1.S1_at--992--2331Chr03:4479828..4479852 (25 bp)
AAACCAAGTCGGCAACTACTGTAGT
LOC_Os03g08730
Os.31563.1.S1_at--366--10811Chr03:4479882..4479906 (25 bp)
TTGTAGCTACTGAACACGGTGCGGT
LOC_Os03g08730
Target Sequence 
ATATTAAAGCCTGCTCTTTCAGCTCCAGTTGTTGCAGTAGCTTCTCCTTCTGCTCTCCGAGCTTGGCTAAATCTTGCTTC
ACAAGTTGACAACTGGGGCAACGCCATTGCCTGCATAGGCGAGACGACTGCCTCAGCAGCTAAGAAATTTGGCCTGAAGA
GCATATATTATCCTACCACCCCGGGACTTGACGGGTGGGTTGAAAGCATCCTTGAAGCGCTCAGAGCCCATGGGCAATCG
AAAGAGGCCCCAGGGTGTTGAACTTGAAGACGGGCAATTTACTTGTACCAGATGCTGGAGGTTGGTGGACATTTGTGGCG
GCTGCATATTGAACTCTGTGCTTCCTTGACTAACCGATCACACACTTTTTGTTGTTTTTCTAATATAATTGAGAGGAGAA
ACCAAGTCGGCAACTACTGTAGTAGAACTACTTGTAAATTGTGAGCTGTTTATTGTAGCTACTGAACACGGTGCGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31563.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis