Browse Element(s) Details


Os.32285.1.S1_at

Description gb:AK119905.1
DB_XREF= gi:37989528
TID=Os.32285.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.32285 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-123-C05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-182-D10, full insert sequence.
FL= gb:AK105398.1 gb:AK119905.1 gb:AK121682.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4952411/11UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os05g354302/11hypothetical protein
LOC_Os11g097002/11Flavonol 3-O-glucosyltransferase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g49500Os.1377.1.S1_at11/113+28118991..28123264Ethylene receptor, putative, expressed
LOC_Os03g49510Os.38046.1.S1_s_at10/113+28129401..28135291Phosphatidylinositol-4-phosphate 5-kinase 1 precursor, putative, expressed
LOC_Os03g49520Os.9674.1.S1_at11/113+28135377..28139289pinin/SDK/memA/ protein conserved region containing protein, expressed
LOC_Os03g49524Os.32285.1.S1_at11/113+28142975..28145688UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os03g49530Os.14919.1.S1_at5/113+28150804..28156921hypothetical protein
LOC_Os03g49530Os.56216.1.S1_at1/113+28150804..28156921hypothetical protein
LOC_Os03g49540NANA3+28162617..28165110transposon protein, putative, Mutator sub-class
LOC_Os03g49550Os.51915.2.S1_at11/113+28168877..28170460UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32285.1.S1_at--729--1711Chr03:28143437..28143461 (25 bp)
ACCAGGGACCGAACGCGCGGCTAAT
LOC_Os03g49524
Os.32285.1.S1_at--467--2751Chr03:28143405..28143429 (25 bp)
AAGAACGCCGGATTGCAGGTGGCAA
LOC_Os03g49524
Os.32285.1.S1_at--515--3931Chr03:28143373..28143397 (25 bp)
CGGCGATGGATCGTTCGACCGAGAA
LOC_Os03g49524
Os.32285.1.S1_at--465--5131Chr03:28143302..28143326 (25 bp)
GCAAAGTGTTTCAAGCCAAAGCCAA
LOC_Os03g49524
Os.32285.1.S1_at--234--1293Chr11:5174398..5174421 (24 bp)
AGATCGTCGCGGACATGGCCTGCCA
LOC_Os11g09700
Os.32285.1.S1_at--1051--7013Chr11:5174429..5174453 (25 bp)
GTACATCGACGGATTCATTCAGCAA
LOC_Os11g09700
Os.32285.1.S1_at--541--9851Chr03:28143201..28143225 (25 bp)
TACAAGGATTGAAGCATCTCAGGAT
LOC_Os03g49524
Os.32285.1.S1_at--702--991Chr03:28143181..28143205 (25 bp)
AGGATGTACACCTGCAACAGTGCAA
LOC_Os03g49524
Os.32285.1.S1_at--827--2491Chr03:28143166..28143190 (25 bp)
AACAGTGCAACTACAAAATCCTTGG
LOC_Os03g49524
Os.32285.1.S1_at--1090--8811Chr03:28143134..28143158 (25 bp)
TGATTTTTGTTTTGTAGTCCACTTA
LOC_Os03g49524
Os.32285.1.S1_at--227--6491Chr03:28143022..28143046 (25 bp)
GATACCGCCCAGACAAAGTTGAAAT
LOC_Os03g49524
Target Sequence 
ACCAGGGACCGAACGCGCGGCTAATCGAGGCGAAGAACGCCGGATTGCAGGTGGCAAGAAACGACGGCGATGGATCGTTC
GACCGAGAAGGCGTCGCGGCGGCGATTCGTGCAGTCGCGGTGGAGGAAGAAAGCAGCAAAGTGTTTCAAGCCAAAGCCAA
GAAGCTGCAGGAGATCGTCGCGGACATGGCCTGCCATGAGAGGTACATCGACGGATTCATTCAGCAATTGAGATCTTACA
AGGATTGAAGCATCTCAGGATGTACACCTGCAACAGTGCAACTACAAAATCCTTGGAATAAAATGATTTTTGTTTTGTAG
TCCACTTACCCAAAATATGCAAAGGCCGAACGGTGGGGAAAATTCTAATCCTGATTTTTTTTTCATTTTTGTTTTTCTTT
GTTATTTATCAATTTGATACCGCCCAGACAAAGTTGAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32285.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis