Browse Element(s) Details


Os.32680.1.S1_at

Description gb:AK103262.1
DB_XREF= gi:32988471
TID=Os.32680.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.32680 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0077B15.1 (OSJNBa0077B15.1), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033124E23, full insert sequence.
FL= gb:AK103262.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0519011/11leucine-rich repeat family protein, putative, expressed
LOC_Os11g474501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g05170OsAffx.5216.1.S1_at11/117+2299055..2299690hypothetical protein
LOC_Os07g05180OsAffx.28281.1.S1_x_at11/117+2309718..2310212SKP1-like protein 1A, putative
LOC_Os07g05180OsAffx.28281.1.S1_at11/117+2309718..2310212SKP1-like protein 1A, putative
LOC_Os07g05190Os.32680.1.S1_at11/117+2311700..2317263leucine-rich repeat family protein, putative, expressed
LOC_Os07g05199OsAffx.22492.1.S1_x_at11/117+2329852..2330385NA
LOC_Os07g05199OsAffx.22492.1.S1_at11/117+2329852..2330385NA
LOC_Os07g05210OsAffx.12617.1.S1_at1/117+2337084..2337482hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007165biological_processsignal transduction
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32680.1.S1_at--883--1251Chr07:2312257..2312281 (25 bp)
AGATTGCTTTGATCCAGCCATGGCT
LOC_Os07g05190
Os.32680.1.S1_at--1093--5411Chr07:2312221..2312245 (25 bp)
GAACCAAGTTTCTGTCAAGGGCATG
LOC_Os07g05190
Os.32680.1.S1_at--984--4711Chr07:2312188..2312212 (25 bp)
GCTGGGCATTGCCTTGAGATGCATC
LOC_Os07g05190
Os.32680.1.S1_at--269--1211Chr07:2312105..2312129 (25 bp)
AGTTTAGCCTCATTGTCTCTAGCAT
LOC_Os07g05190
Os.32680.1.S1_at--926--1311Chr07:2312079..2312103 (25 bp)
AGATGGATACTCTTCTGTGTGTTGA
LOC_Os07g05190
Os.32680.1.S1_at--254--2431Chr07:2312032..2312056 (25 bp)
AAAACTCTAGTGTCGCTGTAGCAAA
LOC_Os07g05190
Os.32680.1.S1_at--1023--651Chr07:2312008..2312032 (25 bp)
ATGCAAGTGTATGGTTGGCCTCGCC
LOC_Os07g05190
Os.32680.1.S1_at--728--8271Chr07:2311962..2311986 (25 bp)
GGCATGTCTCAATTGCTCAAGTGTC
LOC_Os07g05190
Os.32680.1.S1_at--1142--4812Chr11:28141770..28141790 (21 bp)
GCTCAAGTGTCAATGCTGCCTTAAT
LOC_Os11g47450
Os.32680.1.S1_at--780--191Chr07:2311881..2311905 (25 bp)
ATTTCTCTGTAAATCCAGTCACTTG
LOC_Os07g05190
Os.32680.1.S1_at--1091--7111Chr07:2311794..2311818 (25 bp)
GTCAGGGACTTGTACATCTCATGTG
LOC_Os07g05190
Target Sequence 
AGATTGCTTTGATCCAGCCATGGCTTCAGATTCTGAGAACCAAGTTTCTGTCAAGGGCATGAAGGATGTGCTGGGCATTG
CCTTGAGATGCATCCGGCCGGTCTCTGAAAGACCTGGGATCAAGTCTGTGTATGAGGATCTTTCATCAATCTAGTTTAGC
CTCATTGTCTCTAGCATTAGATGGATACTCTTCTGTGTGTTGAGTTGAGTGCATTATTTTGACTGAAAACTCTAGTGTCG
CTGTAGCAAATGCAAGTGTATGGTTGGCCTCGCCTTGATGCCTCCAAGTTCATATGGCATGTCTCAATTGCTCAAGTGTC
AATGCTGCCTTAATTGTTTACATAATTTTCTCTTGCAAGTTAGAGTTGCAAATTAGATTTCTCTGTAAATCCAGTCACTT
GNATCTGTGATTTGGTTGTCAGTNAGTCGTACTAACCAGGACGGTACTGAACATGACGGTACTGTCAGGGACTTGTACAT
CTCATGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32680.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis