Browse Element(s) Details


Os.32933.1.S1_at

Description gb:AK102351.1
DB_XREF= gi:32987560
TID=Os.32933.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32933 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) disease resistance protein -like (B1168H06.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033091E05, full insert sequence.
FL= gb:AK102351.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3368411/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g33630Os.47463.1.S1_x_at6/111+18833366..18838199transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33630Os.14491.2.S1_x_at4/111+18833366..18838199transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33640NANA1+18839680..18842985transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g33650OsAffx.8940.1.S1_at11/111+18847426..18848898hypothetical protein
LOC_Os01g33659NANA1+18853546..18854854NA
LOC_Os01g33670OsAffx.21178.1.S1_x_at11/111+18857174..18858169expressed protein
LOC_Os01g33684Os.32933.1.S1_at11/111+18858748..18867654NB-ARC domain containing protein, expressed
LOC_Os01g33684Os.32933.2.S1_x_at11/111+18858748..18867654NB-ARC domain containing protein, expressed
LOC_Os01g33700Os.40360.1.S1_x_at1/111+18875724..18881551hypothetical protein
LOC_Os01g33710Os.54194.1.S1_at11/111+18882549..18883659expressed protein
LOC_Os01g33720OsAffx.2145.1.S1_at11/111+18885871..18886444hypothetical protein
LOC_Os01g33730NANA1+18887292..18888959retrotransposon protein, putative, unclassified
LOC_Os01g33740NANA1+18892531..18898374retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32933.1.S1_at--13--371Chr01:18859396..18859420 (25 bp)
ATAATTCGCGGGTGCCATCAGCTTC
LOC_Os01g33684
Os.32933.1.S1_at--957--1551Chr01:18859377..18859401 (25 bp)
AGCTTCTATCTCTGCACTTATGTAA
LOC_Os01g33684
Os.32933.1.S1_at--938--10411Chr01:18859360..18859384 (25 bp)
TTATGTAACCCTGCAGTTCTGACGG
LOC_Os01g33684
Os.32933.1.S1_at--301--5931Chr01:18859336..18859360 (25 bp)
GAGCTTGAGATATCCGACTGCCGTG
LOC_Os01g33684
Os.32933.1.S1_at--291--5731Chr01:18859321..18859345 (25 bp)
GACTGCCGTGGATTCATGTACATTG
LOC_Os01g33684
Os.32933.1.S1_at--443--1551Chr01:18859267..18859291 (25 bp)
AGCTTGAAACTTCTTCATTGCCCTC
LOC_Os01g33684
Os.32933.1.S1_at--753--9531Chr01:18859244..18859268 (25 bp)
TCTACTTCAGCTGCGGGACTTGATG
LOC_Os01g33684
Os.32933.1.S1_at--582--1591Chr01:18859217..18859241 (25 bp)
AGCTGCTCCTGAAACTGCCGTAATC
LOC_Os01g33684
Os.32933.1.S1_at--907--9171Chr01:18859202..18859226 (25 bp)
TGCCGTAATCTGTTGTTGTCCGAGG
LOC_Os01g33684
Os.32933.1.S1_at--1103--7991Chr01:18858971..18858995 (25 bp)
GGATGGCTGGTCATACATTTTGATA
LOC_Os01g33684
Os.32933.1.S1_at--561--6491Chr01:18858950..18858974 (25 bp)
GATATAACCGTTATGGTCTCGAGAC
LOC_Os01g33684
Target Sequence 
ATAATTCGCGGGTGCCATCAGCTTCTATCTCTGCACTTATGTAACCCTGCAGTTCTGACGGAGCTTGAGATATCCGACTG
CCGTGGATTCATGTACATTGGAGGATTAAGAAATTTTAGAGACCTTGAAAGCTTGAAACTTCTTCATTGCCCTCTACTTC
AGCTGCGGGACTTGATGCCAGCTGCTCCTGAAACTGCCGTAATCTGTTGTTGTCCGAGGCTGAAGAAGTGGTGCGAATGG
CATGACATAGAGTATAAGGACATTCAGGAAAATCCAGAAGATTCATATGGGAAGCTGTGATACTTTTGTAATTGACCACA
TTTTATTACGACAACTTCTTGAAGATACATATGGGATGGCTGGTCATACATTTTGATATAACCGTTATGGTCTCGAGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32933.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis