Browse Element(s) Details


Os.3356.1.S1_at

Description gb:AK111516.1
DB_XREF= gi:37988179
TID=Os.3356.1
CNT=22
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.3356 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 20144 putative leucine-rich repeat transmembrane protein kinase mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002F24, full insert sequence.
FL= gb:AY224517.1 gb:AK111516.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g250909/11leucine-rich repeat transmembrane protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g25060Os.46544.1.A1_at11/1110+12567955..12570741expressed protein
LOC_Os10g25060Os.46544.2.S1_x_at10/1110+12567955..12570741expressed protein
LOC_Os10g25070NANA10+12572212..12574345retrotransposon protein, putative, unclassified
LOC_Os10g25080NANA10+12576583..12582158retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g25090Os.46690.1.S1_x_at11/1110+12591576..12597050leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os10g25090Os.3356.1.S1_at9/1110+12591576..12597050leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os10g25100OsAffx.20391.1.S1_at11/1110+12606831..12608320hypothetical protein
LOC_Os10g25100OsAffx.655.1.S1_x_at1/1110+12606831..12608320hypothetical protein
LOC_Os10g25110Os.3354.1.S1_at11/1110+12609247..12615362Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os10g25110Os.57305.1.S1_at8/1110+12609247..12615362Pumilio-family RNA binding repeat containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3356.1.S1_at--313--6431Chr10:12591944..12591968 (25 bp)
GATCTTGTGTTGAACCTGCATCCTA
LOC_Os10g25090
Os.3356.1.S1_at--359--571Chr10:12591925..12591949 (25 bp)
ATCCTATCTCTCTGGTGACTGTAAT
LOC_Os10g25090
Os.3356.1.S1_at--363--5731Chr10:12591909..12591933 (25 bp)
GACTGTAATATGTTTGGTTCCTAGA
LOC_Os10g25090
Os.3356.1.S1_at--32--7911Chr10:12591894..12591918 (25 bp)
GGTTCCTAGAACCTGATGCAGATGG
LOC_Os10g25090
Os.3356.1.S1_at--812--8971Chr10:12591840..12591864 (25 bp)
TGAACTTTCAACTCATCAGTACATA
LOC_Os10g25090
Os.3356.1.S1_at--481--2071Chr10:12591820..12591844 (25 bp)
ACATATTCACAGGTTTTGTCTCGTA
LOC_Os10g25090
Os.3356.1.S1_at--205--5591Chr10:12591791..12591815 (25 bp)
GAAATTACAAGTTTGGCTGCTTCAT
LOC_Os10g25090
Os.3356.1.S1_at--93--8491Chr10:12591778..12591802 (25 bp)
TGGCTGCTTCATGCCTAATGATATC
LOC_Os10g25090
Os.3356.1.S1_at--336--4871NONE
GCTATGTTGCAGTGATATCGATCCA
NONE
Os.3356.1.S1_at--702--511NONE
ATCGATCCAATTTACAGTCTGGTAG
NONE
Os.3356.1.S1_at--104--1351Chr10:12591589..12591613 (25 bp)
AGAGTTTTCCATATGCTATACTACT
LOC_Os10g25090
Target Sequence 
GATCTTGTGTTGAACCTGCATCCTATCTCTCTGGTGACTGTAATATGTTTGGTTCCTAGAACCTGATGCAGATGGGGAAA
GGGGAAAAATGGAGGGGGAAATACTGAACTTTCAACTCATCAGTACATATTCACAGGTTTTGTCTCGTATAATGAAATTA
CAAGTTTGGCTGCTTCATGCCTAATGATATCANNNNNNNNANANNNNAAGCTATGTTGCAGTGATATCGATCCAATTTAC
AGTCTGGTAGATTCTTAAAAGTTTATATACTAAAATTAGTTGCATGATATATACTATTTTCTTTGTAAAAAAAAAAGCCA
CAGTTGAATATACTCTTGTAAACATAATTTCTTTACAGAGTTTTCCATATGCTATACTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3356.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis