Browse Element(s) Details


Os.57305.1.S1_at

Description gb:AK111272.1
DB_XREF= gi:32996481
TID=Os.57305.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57305 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-180-G02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-180-G02, full insert sequence.
FL= gb:AK111272.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g251108/11Pumilio-family RNA binding repeat containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g25090Os.46690.1.S1_x_at11/1110+12591576..12597050leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os10g25090Os.3356.1.S1_at9/1110+12591576..12597050leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os10g25100OsAffx.20391.1.S1_at11/1110+12606831..12608320hypothetical protein
LOC_Os10g25100OsAffx.655.1.S1_x_at1/1110+12606831..12608320hypothetical protein
LOC_Os10g25110Os.3354.1.S1_at11/1110+12609247..12615362Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os10g25110Os.57305.1.S1_at8/1110+12609247..12615362Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os10g25120NANA10+12630471..12633214hypothetical protein
LOC_Os10g25130Os.3350.1.S2_a_at11/1110+12636473..12642866Alanine aminotransferase 2, putative, expressed
LOC_Os10g25130Os.3350.1.S1_at11/1110+12636473..12642866Alanine aminotransferase 2, putative, expressed
LOC_Os10g25130Os.3350.1.S1_a_at11/1110+12636473..12642866Alanine aminotransferase 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57305.1.S1_at--626--4291Chr10:12615068..12615092 (25 bp)
CCTTAGCCAAATGCCTCGATGTTTT
LOC_Os10g25110
Os.57305.1.S1_at--385--8831NONE
TGATTCGACTGACGGAGCTCTGTAC
NONE
Os.57305.1.S1_at--1117--1171Chr10:12615028..12615052 (25 bp)
AGCTCTGTACTTCTCGTCGTAAAAT
LOC_Os10g25110
Os.57305.1.S1_at--729--4731NONE
GCTAACTTTAACACCTGATTTCCGC
NONE
Os.57305.1.S1_at--386--1771NONE
ACCTGATTTCCGCTATTGTGGAGAT
NONE
Os.57305.1.S1_at--1024--10371Chr10:12614931..12614955 (25 bp)
TTTTGACATGTTGTAACCCCGTCTC
LOC_Os10g25110
Os.57305.1.S1_at--1038--2231Chr10:12614905..12614929 (25 bp)
AAATTCCTGCACTAGTTATGGCTTG
LOC_Os10g25110
Os.57305.1.S1_at--71--4931Chr10:12614885..12614909 (25 bp)
GCTTGCTTGGCCATCGAGCGTGTTG
LOC_Os10g25110
Os.57305.1.S1_at--454--31Chr10:12614846..12614870 (25 bp)
ATTGGTTCTTGCTTAGTGTGGGAGT
LOC_Os10g25110
Os.57305.1.S1_at--927--2771Chr10:12614804..12614828 (25 bp)
AAGAGCTGAGCTGTTTCAATTTCTG
LOC_Os10g25110
Os.57305.1.S1_at--378--5351Chr10:12614720..12614744 (25 bp)
GAAGATTCACTTGCCTGTTACTGTC
LOC_Os10g25110
Target Sequence 
CCTTAGCCAAATGCCTCGATGTTTTTGATTCGACTGACGGAGCTCTGTACTTCTCGTCGTAAAATGAGTTTTACTGGTTT
GATTAGGTGCTAACTTTAACACCTGATTTCCGCTATTGTGGAGATTTATTTTTTATCTTTTGACATGTTGTAACCCCGTC
TCCAAATTCCTGCACTAGTTATGGCTTGCTTGGCCATCGAGCGTGTTGGGGACAATGGAGTGATTGGTTCTTGCTTAGTG
TGGGAGTAATGGACAATGTATAGCAAGAGCTGAGCTGTTTCAATTTCTGTTGATTATCTTCAAAAGTGTAGCGGTGATAT
GTAAATAGCTTGAACTGGGAATGCTTTTGAAGATTCACTTGCCTGTTACTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57305.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis