Browse Element(s) Details


Os.3350.1.S1_a_at

Description gb:AK102488.1
DB_XREF= gi:32987697
TID=Os.3350.1
CNT=41
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.3350 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative alanine aminotransferase (OSJNBb0061I18.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033094M23, full insert sequence.
FL= gb:AK102488.1 gb:AB007405.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2513011/11Alanine aminotransferase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g25110Os.3354.1.S1_at11/1110+12609247..12615362Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os10g25110Os.57305.1.S1_at8/1110+12609247..12615362Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os10g25120NANA10+12630471..12633214hypothetical protein
LOC_Os10g25130Os.3350.1.S2_a_at11/1110+12636473..12642866Alanine aminotransferase 2, putative, expressed
LOC_Os10g25130Os.3350.1.S1_at11/1110+12636473..12642866Alanine aminotransferase 2, putative, expressed
LOC_Os10g25130Os.3350.1.S1_a_at11/1110+12636473..12642866Alanine aminotransferase 2, putative, expressed
LOC_Os10g25140Os.12002.1.S1_a_at11/1110+12646015..12651092Alanine aminotransferase 2, putative, expressed
LOC_Os10g25150Os.12002.1.S2_at8/1110+12651629..12652123expressed protein
LOC_Os10g25160OsAffx.8167.2.S1_at11/1110+12657954..12658256hypothetical protein
LOC_Os10g25170Os.56665.1.A1_at11/1110+12660665..12662029AP2 domain containing protein, expressed
LOC_Os10g25180Os.46294.1.S1_at10/1110+12666644..12669510hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009853biological_processphotorespiration
GO:0005739cellular_componentmitochondrion
GO:0005777cellular_componentperoxisome
GO:0004021molecular_functionalanine transaminase activity
GO:0047958molecular_functionglycine transaminase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3350.1.S1_a_at--769--2411Chr10:12640655..12640679 (25 bp)
AAAAATGAGGGACTTGTTCTTCTGG
LOC_Os10g25130
Os.3350.1.S1_a_at--195--2451Chr10:12640656..12640680 (25 bp)
AAAATGAGGGACTTGTTCTTCTGGC
LOC_Os10g25130
Os.3350.1.S1_a_at--576--2291Chr10:12640657..12640681 (25 bp)
AAATGAGGGACTTGTTCTTCTGGCT
LOC_Os10g25130
Os.3350.1.S1_a_at--849--2971Chr10:12640658..12640682 (25 bp)
AATGAGGGACTTGTTCTTCTGGCTG
LOC_Os10g25130
Os.3350.1.S1_a_at--41--711Chr10:12640659..12640683 (25 bp)
ATGAGGGACTTGTTCTTCTGGCTGA
LOC_Os10g25130
Os.3350.1.S1_a_at--704--8891Chr10:12640660..12640684 (25 bp)
TGAGGGACTTGTTCTTCTGGCTGAT
LOC_Os10g25130
Os.3350.1.S1_a_at--558--1351Chr10:12640795..12640819 (25 bp)
AGAGAACATCTATGTTGACAACAAG
LOC_Os10g25130
Os.3350.1.S1_a_at--891--5971Chr10:12640796..12640820 (25 bp)
GAGAACATCTATGTTGACAACAAGA
LOC_Os10g25130
Os.3350.1.S1_a_at--65--5491Chr10:12640798..12640822 (25 bp)
GAACATCTATGTTGACAACAAGAAA
LOC_Os10g25130
Os.3350.1.S1_a_at--774--8791Chr10:12640807..12640831 (25 bp)
TGTTGACAACAAGAAATTTAACTCT
LOC_Os10g25130
Os.3350.1.S1_a_at--154--8971Chr10:12640810..12640834 (25 bp)
TGACAACAAGAAATTTAACTCTTTC
LOC_Os10g25130
Target Sequence 
AAAAATGAGGGACTTGTTCTTCTGGCTGATGAGGTGTACCAAGAGAACATCTATGTTGACAACAAGAAATTTAACTCTTT
C

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3350.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis