Browse Element(s) Details


Os.12002.1.S1_a_at

Description gb:AK107029.1
DB_XREF= gi:32992238
TID=Os.12002.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12002 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative alanine aminotransferase 2 (OSJNBb0061I18.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-121-A10, full insert sequence.
FL= gb:AK107029.1 gb:AK119373.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2514011/11Alanine aminotransferase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g25120NANA10+12630471..12633214hypothetical protein
LOC_Os10g25130Os.3350.1.S2_a_at11/1110+12636473..12642866Alanine aminotransferase 2, putative, expressed
LOC_Os10g25130Os.3350.1.S1_at11/1110+12636473..12642866Alanine aminotransferase 2, putative, expressed
LOC_Os10g25130Os.3350.1.S1_a_at11/1110+12636473..12642866Alanine aminotransferase 2, putative, expressed
LOC_Os10g25140Os.12002.1.S1_a_at11/1110+12646015..12651092Alanine aminotransferase 2, putative, expressed
LOC_Os10g25150Os.12002.1.S2_at8/1110+12651629..12652123expressed protein
LOC_Os10g25160OsAffx.8167.2.S1_at11/1110+12657954..12658256hypothetical protein
LOC_Os10g25170Os.56665.1.A1_at11/1110+12660665..12662029AP2 domain containing protein, expressed
LOC_Os10g25180Os.46294.1.S1_at10/1110+12666644..12669510hypothetical protein
LOC_Os10g25190OsAffx.8166.1.S1_at4/1110+12671153..12671479transposon protein, putative, unclassified
LOC_Os10g25200Os.3343.1.S1_at11/1110+12674765..12682733expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009853biological_processphotorespiration
GO:0005739cellular_componentmitochondrion
GO:0005777cellular_componentperoxisome
GO:0004021molecular_functionalanine transaminase activity
GO:0047958molecular_functionglycine transaminase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12002.1.S1_a_at--624--3331Chr10:12650083..12650107 (25 bp)
CACTGGCTTCAGCTCGGAAGTAAGG
LOC_Os10g25140
Os.12002.1.S1_a_at--1077--2191Chr10:12650118..12650142 (25 bp)
ACAAAGTTGCATCCCTAAGCGCATG
LOC_Os10g25140
Os.12002.1.S1_a_at--1015--9771Chr10:12650133..12650157 (25 bp)
TAAGCGCATGCTCCAACATATCTGG
LOC_Os10g25140
Os.12002.1.S1_a_at--571--251Chr10:12650150..12650174 (25 bp)
ATATCTGGCCAGATCCTTATGAGCC
LOC_Os10g25140
Os.12002.1.S1_a_at--491--8911Chr10:12650169..12650193 (25 bp)
TGAGCCTAGTCATGAACCCACCAAA
LOC_Os10g25140
Os.12002.1.S1_a_at--1047--6611Chr10:12650293..12650317 (25 bp)
GTTGGAGATGAGTCATACCCCTCTT
LOC_Os10g25140
Os.12002.1.S1_a_at--186--311Chr10:12650307..12650331 (25 bp)
ATACCCCTCTTATCGTGCAGAAAGA
LOC_Os10g25140
Os.12002.1.S1_a_at--1045--10251Chr10:12650349..12650441 (25 bp)
TTTGTCTTGCTGTGCAGAGGCCATG
LOC_Os10g25140
Os.12002.1.S1_a_at--1048--1311Chr10:12650481..12650503 (23 bp)
AGAGGCCATGGTGTCCACATTCAAC
LOC_Os10g25140
Os.12002.1.S1_a_at--570--3111Chr10:12650542..12650566 (25 bp)
AATATCTGTGTTCCCTAGTGTTCGG
LOC_Os10g25140
Os.12002.1.S1_a_at--683--4531Chr10:12650569..12650593 (25 bp)
GCCGCCACGGGCAATTGAAGCTGCT
LOC_Os10g25140
Target Sequence 
CACTGGCTTCAGCTCGGAAGTAAGGGGAGAAGTATACAAAGTTGCATCCCTAAGCGCATGCTCCAACATATCTGGCCAGA
TCCTTATGAGCCTAGTCATGAACCCACCAAAGGTTGGAGATGAGTCATACCCCTCTTATCGTGCAGAAAGAGACAGCATA
CTATCATCTTTGTCTTGCTGTGCAGAGGCCATGGTGTCCACATTCAACAGCATGGAAGGGATGACTTGCAACAAGGCTGA
AGGTGGAATATCTGTGTTCCCTAGTGTTCGGCTGCCGCCACGGGCAATTGAAGCTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12002.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis