Browse Element(s) Details


Os.56665.1.A1_at

Description gb:AK110269.1
DB_XREF= gi:32995478
TID=Os.56665.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56665 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-163-C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-163-C07, full insert sequence.
FL= gb:AK110269.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2517011/11AP2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g25130Os.3350.1.S2_a_at11/1110+12636473..12642866Alanine aminotransferase 2, putative, expressed
LOC_Os10g25130Os.3350.1.S1_at11/1110+12636473..12642866Alanine aminotransferase 2, putative, expressed
LOC_Os10g25130Os.3350.1.S1_a_at11/1110+12636473..12642866Alanine aminotransferase 2, putative, expressed
LOC_Os10g25140Os.12002.1.S1_a_at11/1110+12646015..12651092Alanine aminotransferase 2, putative, expressed
LOC_Os10g25150Os.12002.1.S2_at8/1110+12651629..12652123expressed protein
LOC_Os10g25160OsAffx.8167.2.S1_at11/1110+12657954..12658256hypothetical protein
LOC_Os10g25170Os.56665.1.A1_at11/1110+12660665..12662029AP2 domain containing protein, expressed
LOC_Os10g25180Os.46294.1.S1_at10/1110+12666644..12669510hypothetical protein
LOC_Os10g25190OsAffx.8166.1.S1_at4/1110+12671153..12671479transposon protein, putative, unclassified
LOC_Os10g25200Os.3343.1.S1_at11/1110+12674765..12682733expressed protein
LOC_Os10g25210Os.46689.1.S1_at11/1110+12684298..12686563F-box protein interaction domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56665.1.A1_at--1069--1131Chr10:12661618..12661642 (25 bp)
AGTCCCTGGAGAGCCTGTTCGCGCA
LOC_Os10g25170
Os.56665.1.A1_at--872--10091Chr10:12661699..12661723 (25 bp)
TATGGAGCTTCGCAGACGACGGCTC
LOC_Os10g25170
Os.56665.1.A1_at--286--4811Chr10:12661720..12661744 (25 bp)
GCTCGTTCTGCTTCTGATGCTGTCA
LOC_Os10g25170
Os.56665.1.A1_at--864--8731Chr10:12661740..12661764 (25 bp)
TGTCAAATCACATCGCCATTGGCGG
LOC_Os10g25170
Os.56665.1.A1_at--745--10871Chr10:12661758..12661782 (25 bp)
TTGGCGGCCATTGCAAGCCATGGCA
LOC_Os10g25170
Os.56665.1.A1_at--788--4331Chr10:12661775..12661799 (25 bp)
CCATGGCATGGCACCTGATGATGCT
LOC_Os10g25170
Os.56665.1.A1_at--388--2571Chr10:12661809..12661833 (25 bp)
AACTGGTCACTCGTTCTTGATGCGT
LOC_Os10g25170
Os.56665.1.A1_at--293--9571Chr10:12661842..12661866 (25 bp)
TCTTGTACAGTGTTTTTCCCCAGCA
LOC_Os10g25170
Os.56665.1.A1_at--849--6791Chr10:12661853..12661877 (25 bp)
GTTTTTCCCCAGCAACAGTGAAGTA
LOC_Os10g25170
Os.56665.1.A1_at--666--3331Chr10:12661891..12661915 (25 bp)
CACTGTTCAGTCATGAGTTCATCGC
LOC_Os10g25170
Os.56665.1.A1_at--786--10011Chr10:12661951..12661975 (25 bp)
TAGCAGTGGCTTTTGTTTGTATAAT
LOC_Os10g25170
Target Sequence 
AGTCCCTGGAGAGCCTGTTCGCGCACGGCGGCGACAGCGCCGCCGTCGACCAAGCGGCGAGCGACCACTGGCCGGCGGCG
CTATGGAGCTTCGCAGACGACGGCTCGTTCTGCTTCTGATGCTGTCAAATCACATCGCCATTGGCGGCCATTGCAAGCCA
TGGCATGGCACCTGATGATGCTGATCCAGNGAACTGGTCACTCGTTCTTGATGCGTTTTCAGTTTCTTGTACAGTGTTTT
TCCCCAGCAACAGTGAAGTAGTATTCAGTTATTCACTGTTCAGTCATGAGTTCATCGCAAAATATGATGTAAGTATGTGT
CTTGAGATTGTTTTAGCAGTGGCTTTTGTTTGTATAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56665.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis