Browse Element(s) Details


Os.3350.1.S2_a_at

Description gb:AB007405.1
DB_XREF= gi:4730885
TID=Os.3350.1
CNT=41
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.3350 (NCBI UniGene Cluster)
DEF=Oryza sativa mRNA for alanine aminotransferase, complete cds.
PROD=alanine aminotransferase
FL= gb:AK102488.1 gb:AB007405.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2513011/11Alanine aminotransferase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g25110Os.3354.1.S1_at11/1110+12609247..12615362Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os10g25110Os.57305.1.S1_at8/1110+12609247..12615362Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os10g25120NANA10+12630471..12633214hypothetical protein
LOC_Os10g25130Os.3350.1.S2_a_at11/1110+12636473..12642866Alanine aminotransferase 2, putative, expressed
LOC_Os10g25130Os.3350.1.S1_at11/1110+12636473..12642866Alanine aminotransferase 2, putative, expressed
LOC_Os10g25130Os.3350.1.S1_a_at11/1110+12636473..12642866Alanine aminotransferase 2, putative, expressed
LOC_Os10g25140Os.12002.1.S1_a_at11/1110+12646015..12651092Alanine aminotransferase 2, putative, expressed
LOC_Os10g25150Os.12002.1.S2_at8/1110+12651629..12652123expressed protein
LOC_Os10g25160OsAffx.8167.2.S1_at11/1110+12657954..12658256hypothetical protein
LOC_Os10g25170Os.56665.1.A1_at11/1110+12660665..12662029AP2 domain containing protein, expressed
LOC_Os10g25180Os.46294.1.S1_at10/1110+12666644..12669510hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009853biological_processphotorespiration
GO:0005739cellular_componentmitochondrion
GO:0005777cellular_componentperoxisome
GO:0004021molecular_functionalanine transaminase activity
GO:0047958molecular_functionglycine transaminase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3350.1.S2_a_at--1003--4391Chr10:12641459..12641483 (25 bp)
GCCACAAAAGGCAATTGACGCTGCT
LOC_Os10g25130
Os.3350.1.S2_a_at--848--51Chr10:12641472..12641496 (25 bp)
ATTGACGCTGCTAAAGCTGCTAACA
LOC_Os10g25130
Os.3350.1.S2_a_at--228--2351Chr10:12641496..12641520 (25 bp)
AAAGCACCTGATGCTTTCTATGCCC
LOC_Os10g25130
Os.3350.1.S2_a_at--593--6691Chr10:12642318..12642342 (25 bp)
GTTCCTGGCACATGGCACATCAGAT
LOC_Os10g25130
Os.3350.1.S2_a_at--400--7591Chr10:12642407..12642431 (25 bp)
GGGCTTCATGGCAGCGTACCGCGAC
LOC_Os10g25130
Os.3350.1.S2_a_at--1109--1631Chr10:12642419..12642443 (25 bp)
AGCGTACCGCGACTGAATTGCCATT
LOC_Os10g25130
Os.3350.1.S2_a_at--708--10371Chr10:12642504..12642528 (25 bp)
TTTTTTGTCCCCATGATAGCATCAT
LOC_Os10g25130
Os.3350.1.S2_a_at--642--6491Chr10:12642518..12642542 (25 bp)
GATAGCATCATCGTGTAGACCAAAA
LOC_Os10g25130
Os.3350.1.S2_a_at--593--10371Chr10:12642572..12642596 (25 bp)
TTTTAGTGTGCTAATCACAGAGGGT
LOC_Os10g25130
Os.3350.1.S2_a_at--198--4451Chr10:12642611..12642635 (25 bp)
GCCTTCGATGGCAAATTGAGGAGAA
LOC_Os10g25130
Os.3350.1.S2_a_at--757--6631Chr10:12642655..12642679 (25 bp)
GTTGTGCCTGTTACTGTATAAATGT
LOC_Os10g25130
Target Sequence 
GCCACAAAAGGCAATTGACGCTGCTAAAGCTGCTAACAAAGCACCTGATGCTTTCTATGCCCTTCGTCTCCTCGAGGCAA
CCGGAATTGTTGTTGTCCCTGGATCTGGATTTGGCCAAGTTCCTGGCACATGGCACATCAGATGCACAATCCTGCCACAG
GAGGAGAAGATCCCCGCGATCATCTCCCGCTTCAAGGCATTCCATGAGGGCTTCATGGCAGCGTACCGCGACTGAATTGC
CATTCACCATTGAACAGATGGGGAGTTCTATACAAGCCTGATGGATTTTCCCCAGGCCTTCTTTTTTTTTGTCCCCATGA
TAGCATCATCGTGTAGACCAAAACAAAATAAATCAAAGCCAGACATGCTTTTTTTTAGTGTGCTAATCACAGAGGGTACT
GAAAAACTGATGCCTTCGATGGCAAATTGAGGAGAAATTTACCTGNCCATTTCGTTGTTGTGCCTGTTACTGTATAAATG
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3350.1.S2_a_at     

Putative homologies in rice

Putative homologies in arabidopsis