Browse Element(s) Details


Os.33962.1.S2_at

Description gb:AK069952.1
DB_XREF= gi:32979976
TID=Os.33962.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33962 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains EST AU095399(E61839)~unknown protein (OSJNBb0011E04.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023036M04, full insert sequence.
FL= gb:AK069952.1 gb:AK073371.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2910011/11SAM domain family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g29050NANA8+17660685..17661412retrotransposon protein, putative, unclassified
LOC_Os08g29060OsAffx.29419.3.S1_at1/118+17663805..17665680retrotransposon protein, putative, unclassified
LOC_Os08g29070OsAffx.20387.1.S1_x_at1/118+17665942..17667252retrotransposon protein, putative, unclassified
LOC_Os08g29080OsAffx.30486.1.S1_at1/118+17668970..17673368retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g29080OsAffx.29222.1.S1_at1/118+17668970..17673368retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g29080OsAffx.31069.1.S1_x_at1/118+17668970..17673368retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g29090OsAffx.20867.1.S1_at10/118+17679322..17680496hypothetical protein
LOC_Os08g29090OsAffx.20867.1.S1_x_at10/118+17679322..17680496hypothetical protein
LOC_Os08g29100Os.33962.1.S1_at11/118+17681656..17684779SAM domain family protein, expressed
LOC_Os08g29100Os.33962.1.S2_at11/118+17681656..17684779SAM domain family protein, expressed
LOC_Os08g29100OsAffx.20866.1.S1_at11/118+17681656..17684779SAM domain family protein, expressed
LOC_Os08g29110Os.35567.1.S1_at10/118+17685599..17687678Thioredoxin family protein, expressed
LOC_Os08g29124Os.16065.2.S1_x_at11/118+17689525..17705293expressed protein
LOC_Os08g29124OsAffx.5972.1.S1_at10/118+17689525..17705293expressed protein
LOC_Os08g29124Os.16065.1.S1_at9/118+17689525..17705293expressed protein
LOC_Os08g29124OsAffx.14555.1.S1_at1/118+17689525..17705293expressed protein
LOC_Os08g29124OsAffx.9687.1.S1_at1/118+17689525..17705293expressed protein
LOC_Os08g29140OsAffx.5973.1.S1_at11/118+17709072..17709728hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33962.1.S2_at--277--951Chr08:17682232..17682256 (25 bp)
AGGAACGCTGTTCGTGCCAACTGGC
LOC_Os08g29100
Os.33962.1.S2_at--910--7991Chr08:17682019..17682043 (25 bp)
GGAGGAACGTTGTTCGCGCCATCTG
LOC_Os08g29100
Os.33962.1.S2_at--304--731Chr08:17681863..17681887 (25 bp)
ATGTTGTACATGGATCTTAAAGCTA
LOC_Os08g29100
Os.33962.1.S2_at--811--1191Chr08:17681824..17681848 (25 bp)
AGTTTGCATGACACAGGGCGGGATT
LOC_Os08g29100
Os.33962.1.S2_at--716--1071Chr08:17681810..17681834 (25 bp)
AGGGCGGGATTTTCTGTCACAAGTT
LOC_Os08g29100
Os.33962.1.S2_at--669--2432Chr09:7776391..7776413 (22 bp)
AAAATCTGGCCTCTATATCCCAAGA
NONE
Os.33962.1.S2_at--401--10151Chr08:17681740..17681764 (25 bp)
TATCCCAAGAGATGTATACAGCCAT
LOC_Os08g29100
Os.33962.1.S2_at--279--2831Chr08:17681715..17681739 (25 bp)
AAGTTCTGTAGATAGTCCCGTTCGT
LOC_Os08g29100
Os.33962.1.S2_at--1023--6491Chr08:17681705..17681729 (25 bp)
GATAGTCCCGTTCGTTGAAGATATG
LOC_Os08g29100
Os.33962.1.S2_at--507--1251Chr08:17681687..17681711 (25 bp)
AGATATGGGCTCTGTTTGGAAGCTA
LOC_Os08g29100
Os.33962.1.S2_at--311--4851Chr08:17681666..17681690 (25 bp)
GCTAGATACTGCAGCTGGACAACAG
LOC_Os08g29100
Target Sequence 
AGGAACGCTGTTCGTGCCAACTGGCTTGCCGGTGAGGCACCGAGGCCAGGCAGCGGCGTGCTGGAGGAGGCGAGCGTGGC
GCTTGTGCGTGCGTGCGGCGAGAAAAAGGATATGATCACTGTTGTGCACGGATCTTAAAGCTAATCGAATGATAATGTTG
TGCATGGTGGAGGGTGGACCTCCAGCAGGGTGCGGTGGACTTGGGTGGCTGGCGGAGGAACGTTGTTCGCGCCATCTGGC
CTGCCGGTGAGGCGCCGAGGCCAGGCGGTGGCGTGCTGGAGGAGGCGAGTGTGGCGCTCGTGCGTGCGTGCGGCGAGAAA
AAGGATATGATCACTGTTGTGCATGGATTTTAAAGCTAATCGAATGAAAATGTTGTACATGGATCTTAAAGCTAATCGAA
TGATAAAAAGTTTGCATGACACAGGGCGGGATTTTCTGTCACAAGTTGTGTAGATTTTTTAGATAATGGATTTAAATAAA
ATCTGGCCTCTATATCCCAAGAGATGTATACAGCCATAAGTTCTGTAGATAGTCCCGTTCGTTGAAGATATGGGCTCTGT
TTGGAAGCTAGATACTGCAGCTGGACAACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33962.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis