Browse Element(s) Details


Os.35338.1.S1_at

Description gb:AK067940.1
DB_XREF= gi:32977958
TID=Os.35338.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35338 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013125O22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013125O22, full insert sequence.
FL= gb:AK067940.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1057011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g10530NANA5+5702407..5705698retrotransposon protein, putative, unclassified
LOC_Os05g10540NANA5+5706328..5712483retrotransposon protein, putative, unclassified
LOC_Os05g10550OsAffx.26814.1.S1_at11/115+5720801..5722058hypothetical protein
LOC_Os05g10560OsAffx.14618.1.S1_x_at11/115+5726656..5727177IQ calmodulin-binding motif family protein, expressed
LOC_Os05g10570Os.35338.1.S1_at11/115+5728909..5730250expressed protein
LOC_Os05g10570Os.50835.1.S1_x_at11/115+5728909..5730250expressed protein
LOC_Os05g10580OsAffx.4294.1.S1_at11/115+5735815..5739914Cullin family protein, expressed
LOC_Os05g10590Os.52472.1.S1_at11/115+5743159..5746733expressed protein
LOC_Os05g10590Os.52472.2.S1_x_at11/115+5743159..5746733expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35338.1.S1_at--866--6551Chr05:5729290..5729534 (25 bp)
GATTAGCATTTCAGCTCATCCAACC
LOC_Os05g10570
Os.35338.1.S1_at--647--10011Chr05:5729293..5729537 (25 bp)
TAGCATTTCAGCTCATCCAACCAAG
LOC_Os05g10570
Os.35338.1.S1_at--400--191Chr05:5729521..5729541 (21 bp)
ATTTCAGCTCATCCAACCAAGCAGC
LOC_Os05g10570
Os.35338.1.S1_at--1141--1571Chr05:5729522..5729546 (25 bp)
AGCTCATCCAACCAAGCAGCCATAT
LOC_Os05g10570
Os.35338.1.S1_at--140--2631Chr05:5729531..5729555 (25 bp)
AACCAAGCAGCCATATCCTCCGACT
LOC_Os05g10570
Os.35338.1.S1_at--279--5731Chr05:5729552..5729576 (25 bp)
GACTGCACCCACCAGATGGTTGGAA
LOC_Os05g10570
Os.35338.1.S1_at--395--3831Chr05:5729554..5729578 (25 bp)
CTGCACCCACCAGATGGTTGGAATT
LOC_Os05g10570
Os.35338.1.S1_at--149--5091Chr05:5729556..5729580 (25 bp)
GCACCCACCAGATGGTTGGAATTGA
LOC_Os05g10570
Os.35338.1.S1_at--1035--4171Chr05:5729559..5729583 (25 bp)
CCCACCAGATGGTTGGAATTGAACT
LOC_Os05g10570
Os.35338.1.S1_at--706--4331Chr05:5729563..5729587 (25 bp)
CCAGATGGTTGGAATTGAACTATGA
LOC_Os05g10570
Os.35338.1.S1_at--439--5473Chr05:5729579..5729708 (25 bp)
GAACTATGAAAGGACCAAGGCGAAA
LOC_Os05g10570
Target Sequence 
GATTAGCATTTCAGCTCATCCAACCAAGCAGCCATATCCTCCGACTGCACCCACCAGATGGTTGGAATTGAACTATGAAA
GGACCAAGGCGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35338.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis