Browse Element(s) Details


Os.35567.1.S1_at

Description gb:AK066851.1
DB_XREF= gi:32976869
TID=Os.35567.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35567 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) similar to thioredoxin (OSJNBb0011E04.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013082H01, full insert sequence.
FL= gb:AK066851.1 gb:AK058590.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2911010/11Thioredoxin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g29050NANA8+17660685..17661412retrotransposon protein, putative, unclassified
LOC_Os08g29060OsAffx.29419.3.S1_at1/118+17663805..17665680retrotransposon protein, putative, unclassified
LOC_Os08g29070OsAffx.20387.1.S1_x_at1/118+17665942..17667252retrotransposon protein, putative, unclassified
LOC_Os08g29080OsAffx.30486.1.S1_at1/118+17668970..17673368retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g29080OsAffx.29222.1.S1_at1/118+17668970..17673368retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g29080OsAffx.31069.1.S1_x_at1/118+17668970..17673368retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g29090OsAffx.20867.1.S1_at10/118+17679322..17680496hypothetical protein
LOC_Os08g29090OsAffx.20867.1.S1_x_at10/118+17679322..17680496hypothetical protein
LOC_Os08g29100Os.33962.1.S1_at11/118+17681656..17684779SAM domain family protein, expressed
LOC_Os08g29100Os.33962.1.S2_at11/118+17681656..17684779SAM domain family protein, expressed
LOC_Os08g29100OsAffx.20866.1.S1_at11/118+17681656..17684779SAM domain family protein, expressed
LOC_Os08g29110Os.35567.1.S1_at10/118+17685599..17687678Thioredoxin family protein, expressed
LOC_Os08g29124Os.16065.2.S1_x_at11/118+17689525..17705293expressed protein
LOC_Os08g29124OsAffx.5972.1.S1_at10/118+17689525..17705293expressed protein
LOC_Os08g29124Os.16065.1.S1_at9/118+17689525..17705293expressed protein
LOC_Os08g29124OsAffx.14555.1.S1_at1/118+17689525..17705293expressed protein
LOC_Os08g29124OsAffx.9687.1.S1_at1/118+17689525..17705293expressed protein
LOC_Os08g29140OsAffx.5973.1.S1_at11/118+17709072..17709728hypothetical protein
LOC_Os08g29150Os.24017.1.S1_at8/118+17711347..17718074Phospholipid-transporting ATPase 9, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0030508molecular_functionthiol-disulfide exchange intermediate activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35567.1.S1_at--6--1911Chr08:17687363..17687387 (25 bp)
ACGTCCCAGGCTCCGGCAAGTACAT
LOC_Os08g29110
Os.35567.1.S1_at--147--4531Chr08:17687208..17687361 (25 bp)
GCCCCGGACTACCTCGTGAAGAAGG
LOC_Os08g29110
Os.35567.1.S1_at--609--931Chr08:17687145..17687169 (25 bp)
AGGAAGGTGCCCCTCATCGTGGATT
LOC_Os08g29110
Os.35567.1.S1_at--31--511Chr08:17687130..17687154 (25 bp)
ATCGTGGATTTCTACGCGACGTGGT
LOC_Os08g29110
Os.35567.1.S1_at--93--8611Chr08:17687109..17687133 (25 bp)
TGGTGCGGACCCTGCGTCCTCATGG
LOC_Os08g29110
Os.35567.1.S1_at--394--9631NONE
TCATGGCCCAGGACATCGAGATGCT
NONE
Os.35567.1.S1_at--183--3011Chr08:17685799..17685823 (25 bp)
AATGAATTGTGATCGCTAGGATATA
LOC_Os08g29110
Os.35567.1.S1_at--309--6371Chr08:17685789..17685813 (25 bp)
GATCGCTAGGATATAGGGACATAGT
LOC_Os08g29110
Os.35567.1.S1_at--587--6251Chr08:17685755..17685779 (25 bp)
GATGTTTGAAGTATTTTAGCCACTA
LOC_Os08g29110
Os.35567.1.S1_at--370--5911Chr08:17685713..17685737 (25 bp)
GAGCTTTCTGATCTTTAGTGGGAAG
LOC_Os08g29110
Os.35567.1.S1_at--623--271Chr08:17685639..17685663 (25 bp)
ATATGTGGGGTTCGTGCTTCAGACT
LOC_Os08g29110
Target Sequence 
ACGTCCCAGGCTCCGGCAAGTACATCGCCCCGGACTACCTCGTGAAGAAGGTGACGGCCAAGGAACTGGAGGAGCTGGTG
AGGGGGGAGAGGAAGGTGCCCCTCATCGTGGATTTCTACGCGACGTGGTGCGGACCCTGCGTCCTCATGGCCCAGGACAT
CGAGATGCTTGCAGTTGAATATGAAAACAATGCCCTGTTTGTGAAGGTGGATACTGATGATGAATATGAACTTGCAAGAG
ATATGCAGGTAAGAGGACTTCCAACACTGTATTTCTTCAGTCCAGATCAAAGCAAAGACGCCCTAAGGACTGAGGGACTG
ATTCCTATTGATATGATCAGAAATATCATTGATAATGAATTGTGATCGCTAGGATATAGGGACATAGTTGAGATTTTGAT
GTTTGAAGTATTTTAGCCACTAGTAGATGTGATAGATTTGAGCTTTCTGATCTTTAGTGGGAAGGTTCTGAATCTTCTGG
TACGCAGAGTCTGCGTGTGGAATGTAGTATGTTATATGTGGGGTTCGTGCTTCAGACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35567.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis