Browse Element(s) Details


Os.35780.1.S1_at

Description gb:AK065821.1
DB_XREF= gi:32975839
TID=Os.35780.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35780 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013043G04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013043G04, full insert sequence.
FL= gb:AK065821.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3895011/11RabGAP/TBC domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g38890OsAffx.18122.1.S1_x_at1/115+22728660..22732949transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g38890OsAffx.3966.1.S1_at1/115+22728660..22732949transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g38900Os.10827.1.S1_x_at6/115+22733542..22734999transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g38900Os.46055.2.S1_x_at4/115+22733542..22734999transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g38910NANA5+22735567..22736094hypothetical protein
LOC_Os05g38920OsAffx.25936.7.S1_s_at5/115+22738157..22741186transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g38920OsAffx.25936.1.S1_s_at4/115+22738157..22741186transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g38920OsAffx.25936.5.S1_x_at2/115+22738157..22741186transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g38920OsAffx.25936.2.S1_x_at2/115+22738157..22741186transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g38920OsAffx.25936.1.S1_at1/115+22738157..22741186transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g38930OsAffx.27233.1.S1_at11/115+22743030..22743383hypothetical protein
LOC_Os05g38940Os.57316.1.S1_at3/115+22745254..22745496expressed protein
LOC_Os05g38950Os.35780.1.S1_at11/115+22751806..22758825RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os05g38960Os.52995.1.S1_at11/115+22770675..22772303expressed protein
LOC_Os05g38969NANA5+22775014..22775695NA
LOC_Os05g38980Os.53380.1.S1_at11/115+22776978..22781871respiratory burst oxidase protein F, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35780.1.S1_at--326--10011Chr05:22752293..22752317 (25 bp)
TAGAAGAGTCTATGGGTTCACCCAA
LOC_Os05g38950
Os.35780.1.S1_at--933--2751Chr05:22752233..22752257 (25 bp)
AAGACAGCGATTTGGCAAGCGTCCA
LOC_Os05g38950
Os.35780.1.S1_at--523--4371Chr05:22752126..22752150 (25 bp)
CCAACCTTTTGCATATATCTTCACC
LOC_Os05g38950
Os.35780.1.S1_at--145--3371Chr05:22752105..22752129 (25 bp)
CACCACTATGGTATTCTTTTATCTG
LOC_Os05g38950
Os.35780.1.S1_at--248--10351Chr05:22752088..22752112 (25 bp)
TTTATCTGATCTTACCATGGTTGTC
LOC_Os05g38950
Os.35780.1.S1_at--459--6131Chr05:22752047..22752071 (25 bp)
GAGGGCTTCAAGGTTCGAACACGAT
LOC_Os05g38950
Os.35780.1.S1_at--155--5511Chr05:22752031..22752055 (25 bp)
GAACACGATCATTGCTGTACCTATT
LOC_Os05g38950
Os.35780.1.S1_at--349--9131Chr05:22752019..22752043 (25 bp)
TGCTGTACCTATTTTTTGCTCTGTC
LOC_Os05g38950
Os.35780.1.S1_at--326--10091Chr05:22751937..22751961 (25 bp)
TAGGTTACTTTTTCTCTCCATTATT
LOC_Os05g38950
Os.35780.1.S1_at--191--7551Chr05:22751893..22751917 (25 bp)
GGGCGAAAGTTATCTGGTTGTCCAT
LOC_Os05g38950
Os.35780.1.S1_at--862--7891Chr05:22751878..22751902 (25 bp)
GGTTGTCCATTAGTTAACTTTCGAT
LOC_Os05g38950
Target Sequence 
TAGAAGAGTCTATGGGTTCACCCAAAGAAGATAACAAGTCGAGAGTAGAGGTGCCAAAGGAAGACAGCGATTTGGCAAGC
GTCCAAGTAGTCGCAAATGATATGAATGGGCAGCATGAACAGTTGCAAGAAATAAAACTGGATTGAACAGTTGCAAGAAA
TCACAAACCAACCTTTTGCATATATCTTCACCACTATGGTATTCTTTTATCTGATCTTACCATGGTTGTCGAGAGAGTTA
AACCTGGAGGGCTTCAAGGTTCGAACACGATCATTGCTGTACCTATTTTTTGCTCTGTCCCCTTCTTTTTAATTGTTTCC
TTTTTTTTTTTTTATCATTGCCACTCTTGTNGGTCTATAGGTTACTTTTTCTCTCCATTATTACTCGAGAAGAGAAAAAA
AGGGCGAAAGTTATCTGGTTGTCCATTAGTTAACTTTCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35780.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis