Browse Element(s) Details

Os.36162.1.S1_at

Description

gb:AK064301.1
DB_XREF= gi:32974319
TID=Os.36162.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.36162 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0439E11.11 (P0439E11.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-107-B03, full insert sequence.
FL= gb:AK064301.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os01g61044	10/11	Transmembrane amino acid transporter protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os01g61010	Os.20187.1.S1_at	11/11	1	+	35630301..35632588	Nodulin-like family protein, expressed
LOC_Os01g61010	Os.20187.2.S1_at	10/11	1	+	35630301..35632588	Nodulin-like family protein, expressed
LOC_Os01g61020	OsAffx.24045.1.S1_at	11/11	1	+	35636453..35639614	D-mannose binding lectin family protein
LOC_Os01g61030	Os.47944.1.S1_a_at	11/11	1	+	35641322..35645694	VHS domain containing protein, expressed
LOC_Os01g61044	Os.36162.1.S1_s_at	11/11	1	+	35647689..35654013	Transmembrane amino acid transporter protein, expressed
LOC_Os01g61044	Os.36162.1.S1_at	10/11	1	+	35647689..35654013	Transmembrane amino acid transporter protein, expressed
LOC_Os01g61060	Os.10716.1.S1_at	11/11	1	+	35655627..35658056	Protein of unknown function, DUF614 containing protein, expressed
LOC_Os01g61070	Os.6864.1.S1_at	11/11	1	+	35659554..35660353	heavy metal-associated domain containing protein, expressed
LOC_Os01g61080	Os.31521.1.S1_at	11/11	1	+	35674831..35677395	DNA-binding protein, putative, expressed
LOC_Os01g61080	OsAffx.13395.1.S1_x_at	1/11	1	+	35674831..35677395	DNA-binding protein, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0006865	biological_process	amino acid transport
GO:0016020	cellular_component	membrane
GO:0005279	molecular_function	amino acid-polyamine transporter activity
GO:0015359	molecular_function	amino acid permease activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.36162.1.S1_at--303--213	1	Chr01:35647839..35647863 (25 bp)	ACAGGAGATGCATTATCGTGTATAA	LOC_Os01g61044
Os.36162.1.S1_at--1--525	1	Chr01:35647805..35647829 (25 bp)	GAATAAGGAATAGTGCCTTCAGAGA	LOC_Os01g61044
Os.36162.1.S1_at--353--523	1	Chr01:35647798..35647822 (25 bp)	GAATAGTGCCTTCAGAGAAAACGGT	LOC_Os01g61044
Os.36162.1.S1_at--491--135	1	Chr01:35647785..35647809 (25 bp)	AGAGAAAACGGTTGGCCCTCATCAG	LOC_Os01g61044
Os.36162.1.S1_at--392--847	1	Chr01:35647773..35647797 (25 bp)	TGGCCCTCATCAGTTAAAAGGTAAA	LOC_Os01g61044
Os.36162.1.S1_at--314--231	1	Chr01:35647757..35647781 (25 bp)	AAAGGTAAACCTATATGATCCATTG	LOC_Os01g61044
Os.36162.1.S1_at--696--783	1	Chr01:35647754..35647778 (25 bp)	GGTAAACCTATATGATCCATTGAAT	LOC_Os01g61044
Os.36162.1.S1_at--305--25	1	Chr01:35647745..35647769 (25 bp)	ATATGATCCATTGAATTGAGAGTTG	LOC_Os01g61044
Os.36162.1.S1_at--889--5	1	Chr01:35647731..35647755 (25 bp)	ATTGAGAGTTGGAGATCGGCAAGAA	LOC_Os01g61044
Os.36162.1.S1_at--623--83	1	Chr01:35647691..35647715 (25 bp)	ATGGATCAAAGTAGAGTTGCCTGCT	LOC_Os01g61044
Os.36162.1.S1_at--1013--795	1	Chr01:35647689..35647713 (25 bp)	GGATCAAAGTAGAGTTGCCTGCTTG	NONE

Target Sequence

ACAGGAGATGCATTATCGTGTATAATGTGATATAGAATAAGGAATAGTGCCTTCAGAGAAAACGGTTGGCCCTCATCAGT
TAAAAGGTAAACCTATATGATCCATTGAATTGAGAGTTGGAGATCGGCAAGAAGAAAGAACATGAATAATGGATCAAAGT
AGAGTTGCCTGCTTG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis