Browse Element(s) Details


Os.36162.1.S1_s_at

Description gb:AK064301.1
DB_XREF= gi:32974319
TID=Os.36162.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.36162 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0439E11.11 (P0439E11.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-107-B03, full insert sequence.
FL= gb:AK064301.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6104411/11Transmembrane amino acid transporter protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61010Os.20187.1.S1_at11/111+35630301..35632588Nodulin-like family protein, expressed
LOC_Os01g61010Os.20187.2.S1_at10/111+35630301..35632588Nodulin-like family protein, expressed
LOC_Os01g61020OsAffx.24045.1.S1_at11/111+35636453..35639614D-mannose binding lectin family protein
LOC_Os01g61030Os.47944.1.S1_a_at11/111+35641322..35645694VHS domain containing protein, expressed
LOC_Os01g61044Os.36162.1.S1_s_at11/111+35647689..35654013Transmembrane amino acid transporter protein, expressed
LOC_Os01g61044Os.36162.1.S1_at10/111+35647689..35654013Transmembrane amino acid transporter protein, expressed
LOC_Os01g61060Os.10716.1.S1_at11/111+35655627..35658056Protein of unknown function, DUF614 containing protein, expressed
LOC_Os01g61070Os.6864.1.S1_at11/111+35659554..35660353heavy metal-associated domain containing protein, expressed
LOC_Os01g61080Os.31521.1.S1_at11/111+35674831..35677395DNA-binding protein, putative, expressed
LOC_Os01g61080OsAffx.13395.1.S1_x_at1/111+35674831..35677395DNA-binding protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006865biological_processamino acid transport
GO:0016020cellular_componentmembrane
GO:0005279molecular_functionamino acid-polyamine transporter activity
GO:0015359molecular_functionamino acid permease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36162.1.S1_s_at--624--9571Chr01:35648332..35648356 (25 bp)
TCTTCGAGTACTCCGGGTCAACATT
LOC_Os01g61044
Os.36162.1.S1_s_at--984--91Chr01:35648310..35648334 (25 bp)
ATTCGCCGTCTGCATCTCGTTGATC
LOC_Os01g61044
Os.36162.1.S1_s_at--536--511Chr01:35648181..35648297 (25 bp)
ATCGTTCTCAGGGATGCTCATGGGA
LOC_Os01g61044
Os.36162.1.S1_s_at--905--5771Chr01:35648125..35648149 (25 bp)
GACGATGATCGCTCTGGCCGTGATC
LOC_Os01g61044
Os.36162.1.S1_s_at--1087--9611Chr01:35648072..35648096 (25 bp)
TCATGAGCTCCATCAGCGGCAAGGT
LOC_Os01g61044
Os.36162.1.S1_s_at--94--891Chr01:35648041..35648065 (25 bp)
AGGCCATGCCGCAGGTAGGTAGCAT
LOC_Os01g61044
Os.36162.1.S1_s_at--89--7871Chr01:35648014..35648038 (25 bp)
GGTATATTGGTTTGCTGTCCGACAG
LOC_Os01g61044
Os.36162.1.S1_s_at--633--2811Chr01:35647985..35648009 (25 bp)
AAGATTCAAGGCTACTGCCCCTGTA
LOC_Os01g61044
Os.36162.1.S1_s_at--746--4191Chr01:35647967..35647991 (25 bp)
CCCTGTAGCGTTCCTCTGTTTTACA
LOC_Os01g61044
Os.36162.1.S1_s_at--738--2391Chr01:35647919..35647943 (25 bp)
AAACTTGCAGGGATTGACTCGTAAC
LOC_Os01g61044
Os.36162.1.S1_s_at--762--10451Chr01:35647868..35647892 (25 bp)
TTAGCGGCGAGTCATTGTTGTATAC
LOC_Os01g61044
Target Sequence 
TCTTCGAGTACTCCGGGTCAACATTCGCCGTCTGCATCTCGTTGATCTTCCCCGGCGCCATCGTTCTCAGGGATGCTCAT
GGGATAGCAAAGACGAAGGACAAGGCATTGGCAGCGACGATGATCGCTCTGGCCGTGATCACGAGCAGCATCGCCATCGC
CTCCAACGTCATGAGCTCCATCAGCGGCAAGGTGGAAGGAGGCCATGCCGCAGGTAGGTAGCATGTGGTATATTGGTTTG
CTGTCCGACAGCATNAAGATTCAAGGCTACTGCCCCTGTAGCGTTCCTCTGTTTTACATTTTTTTNAAAAAAAAGGAAAA
AAAACTTGCAGGGATTGACTCGTAACAATGTATACTTGTGTGTTGTAAGGATTTAGCGGCGAGTCATTGTTGTATAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36162.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis