Browse Element(s) Details


Os.36280.1.S1_at

Description gb:AK063846.1
DB_XREF= gi:32973864
TID=Os.36280.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.36280 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-122-C06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-122-C06, full insert sequence.
FL= gb:AK063846.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4532010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g45250NANA5+26184282..26185055transposon protein, putative, unclassified
LOC_Os05g45260OsAffx.27317.1.S1_at11/115+26190033..26191248hypothetical protein
LOC_Os05g45270Os.53442.1.S1_at10/115+26193336..26196142ribosomal protein L9, N-terminal domain containing protein, expressed
LOC_Os05g45270OsAffx.4622.1.S1_at1/115+26193336..26196142ribosomal protein L9, N-terminal domain containing protein, expressed
LOC_Os05g45280Os.5747.1.S1_at9/115+26196261..26199588membrane protein, putative, expressed
LOC_Os05g45290OsAffx.15112.1.S1_at11/115+26201544..26202035hypothetical protein
LOC_Os05g45300Os.52229.1.S1_at11/115+26202553..26205166enoyl-CoA hydratase/isomerase family protein, expressed
LOC_Os05g45310Os.18326.1.S1_at11/115+26205668..26208715ER lumen protein retaining receptor, putative, expressed
LOC_Os05g45320Os.50603.1.S1_at11/115+26209089..26211365expressed protein
LOC_Os05g45320Os.36280.1.S1_at10/115+26209089..26211365expressed protein
LOC_Os05g45330NANA5+26212287..26213257expressed protein
LOC_Os05g45340OsAffx.27316.1.S1_at11/115+26217143..26223824DNA polymerase III, delta subunit family protein
LOC_Os05g45340OsAffx.7824.1.S1_s_at1/115+26217143..26223824DNA polymerase III, delta subunit family protein
LOC_Os05g45350Os.15152.2.S1_at11/115+26227598..26230909DnaJ domain containing protein, expressed
LOC_Os05g45350Os.15152.1.S1_a_at11/115+26227598..26230909DnaJ domain containing protein, expressed
LOC_Os05g45360NANA5+26234495..26235451hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36280.1.S1_at--68--3811NONE
CTCCCAAAGTTGATGAGAACAGTAA
NONE
Os.36280.1.S1_at--529--10251Chr05:26210934..26210958 (25 bp)
TTTGGGATGCACTTAGGGCTGCTGC
LOC_Os05g45320
Os.36280.1.S1_at--629--10431Chr05:26210969..26210993 (25 bp)
TTACCTCTTGCACAAACCATAGTGA
LOC_Os05g45320
Os.36280.1.S1_at--888--2631Chr05:26210983..26211007 (25 bp)
AACCATAGTGAACAGTGCTGGGATT
LOC_Os05g45320
Os.36280.1.S1_at--489--7671Chr05:26211002..26211026 (25 bp)
GGGATTGTTGTTTCAAATTCTGACA
LOC_Os05g45320
Os.36280.1.S1_at--837--3151Chr05:26211017..26211041 (25 bp)
AATTCTGACATGACGCTTTGTTATG
LOC_Os05g45320
Os.36280.1.S1_at--324--5671Chr05:26211023..26211047 (25 bp)
GACATGACGCTTTGTTATGACGAGA
LOC_Os05g45320
Os.36280.1.S1_at--273--3691Chr05:26211032..26211053 (22 bp)
CTTTGTTATGACGAGAGAGGTGCCA
LOC_Os05g45320
Os.36280.1.S1_at--493--5771Chr05:26211041..26211171 (25 bp)
GACGAGAGAGGTGCCAAGTATGAAC
LOC_Os05g45320
Os.36280.1.S1_at--788--4751Chr05:26211294..26211318 (25 bp)
GCTGACTCAGGACTGTATTTCTCAG
LOC_Os05g45320
Os.36280.1.S1_at--789--9631Chr05:26211300..26211324 (25 bp)
TCAGGACTGTATTTCTCAGAACATA
LOC_Os05g45320
Target Sequence 
CTCCCAAAGTTGATGAGAACAGTAAGAAGCTCAAAAAGCCAAAACCTTGGAAGCACACTCAGGCAATAACACCAACACAA
CTCTCAAAGATGCGTGAAGAATTCTGGGACACGGCTCCACACTATGGAGGCCAGAAAGNNNNNNNNNNNNNNNNNNAGAT
TTGGGATGCACTTAGGGCTGCTGCTGAAGCTGAATTACCTCTTGCACAAACCATAGTGAACAGTGCTGGGATTGTTGTTT
CAAATTCTGACATGACGCTTTGTTATGACGAGAGAGGTGCCAAGTATGAACTGCCCAAGTACGTTTTGAGTGAGCCAACA
AATTTGATCCGTGANCCGTGATGGTTGAGTGAAGATTTATGTTATGTGAATAGAAAAACAGATCCTGTAAATGATGTAAA
TCGTTCATTGATCGCTGACTCAGGACTGTATTTCTCAGAACATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36280.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis