Browse Element(s) Details


Os.36393.1.S1_at

Description gb:AK063538.1
DB_XREF= gi:32973556
TID=Os.36393.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.36393 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-117-C03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-117-C03, full insert sequence.
FL= gb:AK063538.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0965011/11expressed protein
LOC_Os11g202393/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g09590NANA9+5172915..5173313hypothetical protein
LOC_Os09g09600OsAffx.29780.1.S1_at9/119+5175165..5178300hypothetical protein
LOC_Os09g09610OsAffx.29781.1.S1_at11/119+5181571..5182636hypothetical protein
LOC_Os09g09619OsAffx.9066.1.S1_x_at1/119+5185168..5186329NA
LOC_Os09g09630OsAffx.17620.1.S1_at11/119+5186993..5189200WRKY DNA binding domain containing protein
LOC_Os09g09640NANA9+5190398..5190983transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g09650Os.36393.1.S1_at11/119+5196975..5200335expressed protein
LOC_Os09g09650Os.46050.1.A1_x_at2/119+5196975..5200335expressed protein
LOC_Os09g09660NANA9+5201340..5204432retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g09670OsAffx.29782.1.S1_at11/119+5213964..5214838hypothetical protein
LOC_Os09g09670OsAffx.31133.2.S1_at1/119+5213964..5214838hypothetical protein
LOC_Os09g09680NANA9+5222688..5228798retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36393.1.S1_at--640--8531Chr09:5199739..5199763 (25 bp)
TGGACGGACATATCTCACCGGTATG
LOC_Os09g09650
Os.36393.1.S1_at--799--51Chr09:5199810..5199834 (25 bp)
ATTCTACAAGGCTTACCATCATCGC
LOC_Os09g09650
Os.36393.1.S1_at--791--3572Chr09:5199838..5199862 (25 bp)
CATTATATCCTATCCATTCCGAGGA
LOC_Os09g09650
Os.36393.1.S1_at--498--5551Chr09:5199873..5199897 (25 bp)
GAAACGCTCTCAACTATGGACATTA
LOC_Os09g09650
Os.36393.1.S1_at--802--7592Chr09:5199929..5199953 (25 bp)
GGGAACCCGGATGTTTCATATTAAT
LOC_Os09g09650
Os.36393.1.S1_at--307--8871Chr09:5200067..5200091 (25 bp)
TGATGAAGATCCTTACCCATGCTCT
LOC_Os09g09650
Os.36393.1.S1_at--953--431Chr09:5200109..5200133 (25 bp)
ATCTTCTGCACCTCATCTTGAATTT
LOC_Os09g09650
Os.36393.1.S1_at--1088--10351Chr09:5200133..5200157 (25 bp)
TTTTTTACACTTCGCACTTGCATCG
LOC_Os09g09650
Os.36393.1.S1_at--867--9351Chr09:5200144..5200168 (25 bp)
TCGCACTTGCATCGTTATTCACTAA
LOC_Os09g09650
Os.36393.1.S1_at--724--4292Chr09:5200286..5200310 (25 bp)
CCTCTCTAACCCCTATGTGAAATTA
LOC_Os09g09650
Os.36393.1.S1_at--901--10091Chr09:5200299..5200323 (25 bp)
TATGTGAAATTACCCCTTCCTTGGT
LOC_Os09g09650
Target Sequence 
TGGACGGACATATCTCACCGGTATGTGGGGATGAGCCACAAGGGCCAAATCCTCAAGATAATGGTGAGGGAATTCTACAA
GGCTTACCATCATCGCCGCCATTATATCCTATCCATTCCGAGGATGAAGCTGAAGAAACGCTCTCAACTATGGACATTAA
TGAGCCTAGTCAGGAGCTTGAAGTAGCAAGGGGAACCCGGATGTTTCATATTAATGACCTAAATGTTCCCCCAATCTGGA
CTGAAACTCCAGAAGAAGAAGATGATCCAGAAGAACAAGTGTTCGAGATGCAAGAACATATTTCTATGTATGCTGATGAT
TAAGGAGATGATGAAGATCCTTACCCATGCTCTGCCCCTAATACTGCTGCATCTTCTGCACCTCATCTTGAATTTTTTTT
TACACTTCGCACTTGCATCGTTATTCACTAACCCCGCGGAAGGTAGTGGTGAGTGATTTGATGATTAGGAGTTGTAGATA
GTGTGTTAATAGTTAGAGGTCATATAAATAAATAAACTTGCTAGTATAGGTTAGCAAATGNCCATACTCCTCTCTAACCC
CTATGTGAAATTACCCCTTCCTTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36393.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis