Browse Element(s) Details


Os.36451.2.S1_x_at

Description gb:NM_187746.1
DB_XREF= gi:34902577
GEN=OJ1123F12.8
TID=Os.36451.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.36451 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) Putative far-red impaired response protein (OJ1123F12.8), mRNA.
PROD=Putative far-red impaired response protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0686011/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g06780OsAffx.22252.2.S1_x_at11/113+3426110..3426364hypothetical protein
LOC_Os03g06780OsAffx.22251.1.S1_x_at7/113+3426110..3426364hypothetical protein
LOC_Os03g06780OsAffx.22252.1.S1_x_at3/113+3426110..3426364hypothetical protein
LOC_Os03g06780OsAffx.12758.1.S1_x_at2/113+3426110..3426364hypothetical protein
LOC_Os03g06790OsAffx.22251.1.S1_x_at11/113+3428614..3428835hypothetical protein
LOC_Os03g06790OsAffx.22252.1.S1_x_at4/113+3428614..3428835hypothetical protein
LOC_Os03g06790OsAffx.22252.2.S1_x_at4/113+3428614..3428835hypothetical protein
LOC_Os03g06790OsAffx.12758.1.S1_x_at2/113+3428614..3428835hypothetical protein
LOC_Os03g06800OsAffx.22252.1.S1_x_at11/113+3431853..3432119hypothetical protein
LOC_Os03g06800OsAffx.22252.2.S1_x_at4/113+3431853..3432119hypothetical protein
LOC_Os03g06800OsAffx.22251.1.S1_x_at2/113+3431853..3432119hypothetical protein
LOC_Os03g06800OsAffx.12758.1.S1_x_at1/113+3431853..3432119hypothetical protein
LOC_Os03g06810OsAffx.12758.1.S1_at11/113+3433880..3434470expressed protein
LOC_Os03g06810OsAffx.12758.1.S1_x_at11/113+3433880..3434470expressed protein
LOC_Os03g06810OsAffx.22252.2.S1_x_at4/113+3433880..3434470expressed protein
LOC_Os03g06810OsAffx.22251.1.S1_x_at3/113+3433880..3434470expressed protein
LOC_Os03g06810OsAffx.22252.1.S1_x_at1/113+3433880..3434470expressed protein
LOC_Os03g06820OsAffx.3155.1.S1_at11/113+3437819..3438052hypothetical protein
LOC_Os03g06820OsAffx.3155.1.S1_x_at11/113+3437819..3438052hypothetical protein
LOC_Os03g06830OsAffx.24997.1.S1_at11/113+3441932..3442201hypothetical protein
LOC_Os03g06840Os.18038.1.S1_at11/113+3447352..3448250GRF zinc finger family protein, expressed
LOC_Os03g06850Os.38278.2.S1_x_at11/113+3449132..3449882B3 DNA binding domain containing protein, expressed
LOC_Os03g06850Os.38278.2.S1_at11/113+3449132..3449882B3 DNA binding domain containing protein, expressed
LOC_Os03g06850Os.38278.1.S1_at3/113+3449132..3449882B3 DNA binding domain containing protein, expressed
LOC_Os03g06860Os.36451.2.S1_x_at11/113+3450288..3452699transposon protein, putative, unclassified, expressed
LOC_Os03g06860Os.36451.1.S1_at3/113+3450288..3452699transposon protein, putative, unclassified, expressed
LOC_Os03g06870OsAffx.3156.1.S1_at11/113+3455682..3455939expressed protein
LOC_Os03g06880Os.15977.1.S1_at11/113+3458553..3461310pfkB-type carbohydrate kinase family protein, putative, expressed
LOC_Os03g06890OsAffx.24998.1.S1_at11/113+3462464..3464819expressed protein
LOC_Os03g06900OsAffx.10050.1.S1_at11/113+3468980..3479199DNA topoisomerase family protein, expressed
LOC_Os03g06900OsAffx.15517.1.S1_at1/113+3468980..3479199DNA topoisomerase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36451.2.S1_x_at--355--5871Chr03:3451411..3451435 (25 bp)
GAGCCTTGTCATTTTGATTGAGCAC
LOC_Os03g06860
Os.36451.2.S1_x_at--250--5491Chr03:3451383..3451407 (25 bp)
GAACATTGCTTGTCACGTATGCGTC
LOC_Os03g06860
Os.36451.2.S1_x_at--1040--7091Chr03:3451372..3451396 (25 bp)
GTCACGTATGCGTCATCAAGAGGCA
LOC_Os03g06860
Os.36451.2.S1_x_at--414--2351Chr03:3451335..3451359 (25 bp)
AAAGCATCTCAGTCAGTACCATTTA
LOC_Os03g06860
Os.36451.2.S1_x_at--454--10491Chr03:3451313..3451337 (25 bp)
TTACAAGCAATGACTCTACTCTAAT
LOC_Os03g06860
Os.36451.2.S1_x_at--774--2911Chr03:3451284..3451308 (25 bp)
AAGGATGCAGCTCGTGTTTTTACAC
LOC_Os03g06860
Os.36451.2.S1_x_at--845--6911Chr03:3450942..3450966 (25 bp)
GTATGGTTCAATTTACACTTGGTCA
LOC_Os03g06860
Os.36451.2.S1_x_at--172--3291Chr03:3450914..3450938 (25 bp)
CAAATGGAACGCTATCGGCTGTTGC
LOC_Os03g06860
Os.36451.2.S1_x_at--856--5392Chr04:6442466..6442561 (25 bp)
GAAGCTTTTTTCAAATCATCCATGA
NONE
Os.36451.2.S1_x_at--31--5671Chr03:3450710..3450734 (25 bp)
GACATGGTGCTTGATCCGACACAAA
LOC_Os03g06860
Os.36451.2.S1_x_at--67--3271Chr03:3450689..3450713 (25 bp)
CAAATTGTCCCTAAAGGAGCTCCGA
LOC_Os03g06860
Target Sequence 
GAGCCTTGTCATTTTGATTGAGCACTATGAACATTGCTTGTCACGTATGCGTCATCAAGAGGCAGAGTTGGATGCAAAAG
CATCTCAGTCAGTACCATTTACAAGCAATGACTCTACTCTAATAGAGAAGGATGCAGCTCGTGTTTTTACACCTAAAATT
TTCAAGAAGGTTAAGGTGGAGTTATACATGGGCATGAATTGGGAGGTAATAGATACTATAGAGGAGGACAATTGTGTCAG
GTATGGTTCAATTTACACTTGGTCAGACCAAATGGAACGCTATCGGCTGTTGCGTTGTTTGGGTAGTGAAGCTTTTTTCA
AATCATCCATGACAGAAGAGAGCACGGTGAAAGTAATGAAGATGTTAGAGAATCTAATGCTTGAAGAGGATAGTAGTGAA
AATTATGAAAATTTTGACATTGAGTTTGGTTATGTGGTTGGGCAAAGTAGCCGGAATGATATTGAAAGTGGTGACATGGT
GCTTGATCCGACACAAATTGTCCCTAAAGGAGCTCCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36451.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis