Browse Element(s) Details


Os.36511.1.S1_at

Description gb:AK063219.1
DB_XREF= gi:32973237
TID=Os.36511.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.36511 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-112-E03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-112-E03, full insert sequence.
FL= gb:AK063219.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g501491/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g50120Os.49669.1.S1_at11/111+29125731..29131287expressed protein
LOC_Os01g50120Os.57098.1.S1_at11/111+29125731..29131287expressed protein
LOC_Os01g50140NANA1+29135092..29135604transposon protein, putative, unclassified
LOC_Os01g50149Os.36511.1.S1_at1/111+29150447..29150624NA
LOC_Os01g50160Os.9066.1.S1_s_at11/111+29152592..29159502multidrug resistance protein 1 homolog, putative, expressed
LOC_Os01g50160Os.49647.1.S1_at8/111+29152592..29159502multidrug resistance protein 1 homolog, putative, expressed
LOC_Os01g50170Os.50995.1.S1_at11/111+29162090..29163731Eukaryotic aspartyl protease family protein, expressed
LOC_Os01g50180OsAffx.19542.3.S1_x_at10/111+29166251..29172064retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g50180OsAffx.9949.1.S1_at1/111+29166251..29172064retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g50190OsAffx.29949.1.S1_at11/111+29173263..29173790hypothetical protein
LOC_Os01g50190OsAffx.29949.1.S1_x_at11/111+29173263..29173790hypothetical protein
LOC_Os01g50200Os.5862.1.S1_at10/111+29174805..29176566UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36511.1.S1_at--964--7571Chr01:29150884..29150908 (25 bp)
GGGCTGCTCTGCTAGCTGGGACAAC
NONE
Os.36511.1.S1_at--1081--1611Chr01:29150871..29150895 (25 bp)
AGCTGGGACAACGATGGCTCCCATG
NONE
Os.36511.1.S1_at--943--4791Chr01:29150855..29150879 (25 bp)
GCTCCCATGGGCAGATCTGTCGGTG
NONE
Os.36511.1.S1_at--821--4551Chr01:29150780..29150804 (25 bp)
GCGCTCGGATTTGTCAGTTGCAACG
NONE
Os.36511.1.S1_at--935--8311Chr01:29150650..29150674 (25 bp)
GGCTCTCGCACATGGAGGCAGCAAT
NONE
Os.36511.1.S1_at--331--10591Chr01:29150466..29150608 (25 bp)
TTCTCGTCTGCAGGGATGTTGTTGT
LOC_Os01g50149
Os.36511.1.S1_at--455--7691Chr01:29150370..29150394 (25 bp)
GGGTGATAGGGAGCAACTTAATTTA
NONE
Os.36511.1.S1_at--1087--2511Chr01:29150356..29150380 (25 bp)
AACTTAATTTAAGCCGATGCATCGA
NONE
Os.36511.1.S1_at--108--4511Chr01:29150344..29150368 (25 bp)
GCCGATGCATCGAGCCAGCGTTTTT
NONE
Os.36511.1.S1_at--76--10351Chr01:29150319..29150343 (25 bp)
TTTTTCCGCATTCGTGGAACCTCAA
NONE
Os.36511.1.S1_at--1108--7751Chr01:29150293..29150317 (25 bp)
GGTGCTAGTTTCTAAACTGAACTTT
NONE
Target Sequence 
GGGCTGCTCTGCTAGCTGGGACAACGATGGCTCCCATGGGCAGATCTGTCGGTGGCGACGGCNGANACTGTGCANATCCA
TAGGCTGCGGCGGCGGTGGCTCCCGCGCTCGGATTTGTCAGTTGCAACGACNATGGCTCCCGTGGCCGGATCCATTGGNT
CAGATGACGACNANCATGGGCTCCCATGANCGGATCCGGNCGATGTCTCCCGCAGATGGATCCAGNGGCGNCNATGGCTC
TCGCACATGGAGGCAGCAATGGCAACCTCNGCGCCCCAATGAGCGATGGCGGCAGGCGGAGTTCTCGTCTGCAGGGATGT
TGTTGTTAGATGGATTGATGGGTGATTTGTGTTTTGTGATTTGGAGGATGTTGTTGGATAAATCGATGGTGGTATGGGGG
TGATAGGGAGCAACTTAATTTAAGCCGATGCATCGAGCCAGCGTTTTTTTTTTCCGCATTCGTGGAACCTCAAAGGTGCT
AGTTTCTAAACTGAACTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36511.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis