Browse Element(s) Details


Os.37890.1.S1_s_at

Description gb:AK061288.1
DB_XREF= gi:32971306
TID=Os.37890.1
CNT=43
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.37890 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023086A05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-212-H12, full insert sequence.
FL= gb:AK061288.1 gb:AK071260.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2407011/11Nonspecific lipid-transfer protein 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g24060Os.10197.1.S1_at11/1111+13161298..13163220xanthine/uracil/vitamin C permease family protein, putative, expressed
LOC_Os11g24070Os.37890.1.S1_s_at11/1111+13168268..13169248Nonspecific lipid-transfer protein 1 precursor, putative, expressed
LOC_Os11g24070Os.37890.1.S1_at10/1111+13168268..13169248Nonspecific lipid-transfer protein 1 precursor, putative, expressed
LOC_Os11g24080OsAffx.18979.1.S1_at11/1111+13177193..13178004hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006649biological_processphospholipid transfer to membrane
GO:0006869biological_processlipid transport
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0005618cellular_componentcell wall
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0005516molecular_functioncalmodulin binding
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37890.1.S1_s_at--236--3711Chr11:13168987..13169011 (25 bp)
CTAGCTAGGTCCATCGATCACCATG
LOC_Os11g24070
Os.37890.1.S1_s_at--87--1571Chr11:13168989..13169013 (25 bp)
AGCTAGGTCCATCGATCACCATGCA
LOC_Os11g24070
Os.37890.1.S1_s_at--216--8851Chr11:13169033..13169057 (25 bp)
TGATCGGCCCGGTCAGTCCAGCTAG
LOC_Os11g24070
Os.37890.1.S1_s_at--822--3451Chr11:13169046..13169070 (25 bp)
CAGTCCAGCTAGCTTCCTGTTATGT
LOC_Os11g24070
Os.37890.1.S1_s_at--740--7471Chr11:13169069..13169093 (25 bp)
GTGTGTTCGTCTCGTTTAATTTGCT
LOC_Os11g24070
Os.37890.1.S1_s_at--302--9411Chr11:13169075..13169099 (25 bp)
TCGTCTCGTTTAATTTGCTCCTTTT
LOC_Os11g24070
Os.37890.1.S1_s_at--928--3111Chr11:13169086..13169110 (25 bp)
AATTTGCTCCTTTTTGAGGTGTACG
LOC_Os11g24070
Os.37890.1.S1_s_at--375--4771Chr11:13169091..13169115 (25 bp)
GCTCCTTTTTGAGGTGTACGTACCA
LOC_Os11g24070
Os.37890.1.S1_s_at--568--7731Chr11:13169103..13169127 (25 bp)
GGTGTACGTACCAGTGAGAGCTAGA
LOC_Os11g24070
Os.37890.1.S1_s_at--949--9931Chr11:13169107..13169131 (25 bp)
TACGTACCAGTGAGAGCTAGAGATT
LOC_Os11g24070
Os.37890.1.S1_s_at--705--4331Chr11:13169113..13169137 (25 bp)
CCAGTGAGAGCTAGAGATTGAGTTT
LOC_Os11g24070
Target Sequence 
CTAGCTAGGTCCATCGATCACCATGCATGCATGTGTGTATGGTTATTGATCGGCCCGGTCAGTCCAGCTAGCTTCCTGTT
ATGTGTGTTCGTCTCGTTTAATTTGCTCCTTTTTGAGGTGTACGTACCAGTGAGAGCTAGAGATTGAGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37890.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis