Browse Element(s) Details


Os.37909.1.S1_at

Description gb:AK060058.1
DB_XREF= gi:32970076
TID=Os.37909.1
CNT=28
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.37909 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-038-A07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-305-F02, full insert sequence.
FL= gb:AK060058.1 gb:AK104716.1 gb:AK098850.1 gb:AK119727.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2778011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g27740OsAffx.27046.1.S1_at11/115+16078284..16081517hypothetical protein
LOC_Os05g27740Os.23623.1.A1_at1/115+16078284..16081517hypothetical protein
LOC_Os05g27749OsAffx.27053.1.S1_at11/115+16083470..16084687hypothetical protein
LOC_Os05g27760OsAffx.27054.1.S1_at11/115+16089380..16090042hypothetical protein
LOC_Os05g27770NANA5+16094038..16098387retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g27780Os.37909.1.S1_at11/115+16100403..16101538expressed protein
LOC_Os05g27780Os.25952.1.S1_at11/115+16100403..16101538expressed protein
LOC_Os05g27790Os.48871.1.A1_at11/115+16105976..16108654expressed protein
LOC_Os05g27800OsAffx.4447.1.S1_at11/115+16124622..16125050expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009414biological_processresponse to water deprivation
GO:0009617biological_processresponse to bacteria
GO:0009644biological_processresponse to high light intensity
GO:0005737cellular_componentcytoplasm
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37909.1.S1_at--826--3811Chr05:16101157..16101181 (25 bp)
CTCCACCCCTCATCTGGTGGGAGAA
LOC_Os05g27780
Os.37909.1.S1_at--854--1791Chr05:16101153..16101177 (25 bp)
ACCCCTCATCTGGTGGGAGAACCGG
LOC_Os05g27780
Os.37909.1.S1_at--480--4151Chr05:16101151..16101175 (25 bp)
CCCTCATCTGGTGGGAGAACCGGCG
LOC_Os05g27780
Os.37909.1.S1_at--988--471Chr05:16101146..16101170 (25 bp)
ATCTGGTGGGAGAACCGGCGGATGA
LOC_Os05g27780
Os.37909.1.S1_at--74--7131Chr05:16100778..16100802 (25 bp)
GTCATCGTCGTCAAGATCTGGGTTT
LOC_Os05g27780
Os.37909.1.S1_at--101--3551Chr05:16100776..16100800 (25 bp)
CATCGTCGTCAAGATCTGGGTTTTG
LOC_Os05g27780
Os.37909.1.S1_at--968--9391Chr05:16100774..16100798 (25 bp)
TCGTCGTCAAGATCTGGGTTTTGGT
LOC_Os05g27780
Os.37909.1.S1_at--531--7191Chr05:16100772..16100796 (25 bp)
GTCGTCAAGATCTGGGTTTTGGTCA
LOC_Os05g27780
Os.37909.1.S1_at--282--9731Chr05:16100768..16100792 (25 bp)
TCAAGATCTGGGTTTTGGTCAGGAT
LOC_Os05g27780
Os.37909.1.S1_at--1146--6391Chr05:16100764..16100788 (25 bp)
GATCTGGGTTTTGGTCAGGATCTAT
LOC_Os05g27780
Os.37909.1.S1_at--683--9451Chr05:16100762..16100786 (25 bp)
TCTGGGTTTTGGTCAGGATCTATGG
LOC_Os05g27780
Target Sequence 
CTCCACCCCTCATCTGGTGGGAGAACCGGCGGATGAGAAGGAGGGCAAGGNTTTCGGCGGCGCCGGGGGGAAGAAGGTGA
AGGGCGGGTCCGCCGAGGTGGTNGGCGTGGGGCATCGACAAGTGGTGGCGCGCGCACTCCTCGCCGCCGGAGGTGCCCAG
GTACGCCGACAAGGCGCCCAGGAGGGTCGCCGCCGCCGCCGCTAGGGTCAACCCCCGCCCCATCCAGCAGCCGCGCTGAG
CGTCCGTCTCCGCCGCCGCCCGCGTAATCATCCATCCATCCACCCATCTTGACAAACAAGCAGAAAAAAATTAGGGAAAA
AAAGGTTTTGTTTTGTTATTTTCGATCTACTCCTAGCTTTTTTGCTAATCTCGTCGCGTCGTCATCGTCGTCAAGATCTG
GGTTTTGGTCAGGATCTATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37909.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis