Browse Element(s) Details


Os.38041.1.S2_at

Description gb:CB633988
DB_XREF= gi:29628977
DB_XREF=OSIIEb13D10.r
CLONE=OSIIEb13D10
TID=Os.38041.1
CNT=29
FEA=FLmRNA
TIER=ConsEnd
STK=1
UG=Os.38041 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033031C13, full insert sequence
FL= gb:AK101218.1 gb:AK060561.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0663010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g06580NANA5+3376989..3378819retrotransposon protein, putative, unclassified
LOC_Os05g06590NANA5+3382887..3385701retrotransposon protein, putative, unclassified
LOC_Os05g06600OsAffx.26762.1.S1_at11/115+3386486..3388890hypothetical protein
LOC_Os05g06600OsAffx.8723.1.S1_at2/115+3386486..3388890hypothetical protein
LOC_Os05g06600Os.54405.1.S1_at1/115+3386486..3388890hypothetical protein
LOC_Os05g06610NANA5+3389850..3394296retrotransposon protein, putative, unclassified
LOC_Os05g06620Os.7307.3.S1_x_at1/115+3398518..3400491retrotransposon protein, putative, unclassified
LOC_Os05g06630Os.38041.1.S1_at11/115+3402684..3406845expressed protein
LOC_Os05g06630Os.38041.1.S2_at10/115+3402684..3406845expressed protein
LOC_Os05g06630Os.24178.1.A1_x_at2/115+3402684..3406845expressed protein
LOC_Os05g06640NANA5+3409036..3411131retrotransposon protein, putative, unclassified
LOC_Os05g06650Os.24080.1.A1_at11/115+3412487..3416256expressed protein
LOC_Os05g06660Os.18819.1.S1_at11/115+3417229..3421788Serine carboxypeptidase II precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38041.1.S2_at--934--10131Chr05:3406293..3406317 (25 bp)
TATGCATGCGCGTGTGAGAGATCCC
LOC_Os05g06630
Os.38041.1.S2_at--99--6011NONE
GAGAGATCCCAACTGTTCCTAACGA
NONE
Os.38041.1.S2_at--1097--5211Chr05:3406328..3406351 (24 bp)
TAACGAACGCGGCAACTTGGTAACT
LOC_Os05g06630
Os.38041.1.S2_at--430--7051Chr05:3406346..3406370 (25 bp)
GTAACTTGCCCCTATGGTTGTTCCA
LOC_Os05g06630
Os.38041.1.S2_at--165--6651Chr05:3406362..3406386 (25 bp)
GTTGTTCCACAAACCTGCATTGCAA
LOC_Os05g06630
Os.38041.1.S2_at--732--7432Chr05:3406436..3406460 (25 bp)
GTGTATTGATGTTCAGTTCGGCTGC
LOC_Os05g06630
Os.38041.1.S2_at--359--2691Chr05:3406568..3406592 (25 bp)
AAGCTGCACAGGACTGTACCGTGGA
LOC_Os05g06630
Os.38041.1.S2_at--159--7772Chr05:3406613..3406637 (25 bp)
GGTGCATGATAATCTCAGCCCTGCT
LOC_Os05g06630
Os.38041.1.S2_at--246--7412Chr05:3406724..3406748 (25 bp)
GTGATCTCAATAGGTGTTTGCTCGA
LOC_Os05g06630
Os.38041.1.S2_at--515--6851Chr05:3406739..3406763 (25 bp)
GTTTGCTCGAATTACAGTTGTCTTT
LOC_Os05g06630
Os.38041.1.S2_at--960--8591Chr05:3406791..3406815 (25 bp)
TGGTGCCACCTCAACTTTGCTAAAT
LOC_Os05g06630
Target Sequence 
TATGCATGCGCGTGTGAGAGATCCCAACTGTTCCTAACGAACGCGGCAACTTGGTAACTTGCCCCTATGGTTGTTCCACA
AACCTGCATTGCAATGTTTTGCTGATGTTTCAGCATGAATACTAGTAATGACATTCACATGATGTGTATTGATGTTCAGT
TCGGCTGCTTTGATGAACAGACTGATTCGGGTAAATTGTAGGTCATTGTTGGATATTTTGGATTATATATGCATATTACC
AATATATTTGTACAGTTATTTGTAAGATTTCAGAGAAGCTGCACAGGACTGTACCGTGGAGGATAATGGGGATAATCTGA
GGTGCATGATAATCTCAGCCCTGCTCTGATGAGCTTGGAATATGTAGGTAGGATGGAATTAAGTACTGAGAAATTATAAG
AGTTGAGGTATGGTCACTGCAGAAGAAACGGGTGATCTCAATAGGTGTTTGCTCGAATTACAGTTGTCTTTTGGATCTTT
TGTTGGGGCATTTTTCCCTGGTGCCACCTCAACTTTGCTAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38041.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis