Browse Element(s) Details


Os.38278.2.S1_at

Description gb:NM_187747.1
DB_XREF= gi:34902579
GEN=OJ1123F12.9
TID=Os.38278.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.38278 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) Unknown protein (OJ1123F12.9), mRNA.
PROD=Unknown protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0685011/11B3 DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g06780OsAffx.22252.2.S1_x_at11/113+3426110..3426364hypothetical protein
LOC_Os03g06780OsAffx.22251.1.S1_x_at7/113+3426110..3426364hypothetical protein
LOC_Os03g06780OsAffx.22252.1.S1_x_at3/113+3426110..3426364hypothetical protein
LOC_Os03g06780OsAffx.12758.1.S1_x_at2/113+3426110..3426364hypothetical protein
LOC_Os03g06790OsAffx.22251.1.S1_x_at11/113+3428614..3428835hypothetical protein
LOC_Os03g06790OsAffx.22252.1.S1_x_at4/113+3428614..3428835hypothetical protein
LOC_Os03g06790OsAffx.22252.2.S1_x_at4/113+3428614..3428835hypothetical protein
LOC_Os03g06790OsAffx.12758.1.S1_x_at2/113+3428614..3428835hypothetical protein
LOC_Os03g06800OsAffx.22252.1.S1_x_at11/113+3431853..3432119hypothetical protein
LOC_Os03g06800OsAffx.22252.2.S1_x_at4/113+3431853..3432119hypothetical protein
LOC_Os03g06800OsAffx.22251.1.S1_x_at2/113+3431853..3432119hypothetical protein
LOC_Os03g06800OsAffx.12758.1.S1_x_at1/113+3431853..3432119hypothetical protein
LOC_Os03g06810OsAffx.12758.1.S1_at11/113+3433880..3434470expressed protein
LOC_Os03g06810OsAffx.12758.1.S1_x_at11/113+3433880..3434470expressed protein
LOC_Os03g06810OsAffx.22252.2.S1_x_at4/113+3433880..3434470expressed protein
LOC_Os03g06810OsAffx.22251.1.S1_x_at3/113+3433880..3434470expressed protein
LOC_Os03g06810OsAffx.22252.1.S1_x_at1/113+3433880..3434470expressed protein
LOC_Os03g06820OsAffx.3155.1.S1_at11/113+3437819..3438052hypothetical protein
LOC_Os03g06820OsAffx.3155.1.S1_x_at11/113+3437819..3438052hypothetical protein
LOC_Os03g06830OsAffx.24997.1.S1_at11/113+3441932..3442201hypothetical protein
LOC_Os03g06840Os.18038.1.S1_at11/113+3447352..3448250GRF zinc finger family protein, expressed
LOC_Os03g06850Os.38278.2.S1_x_at11/113+3449132..3449882B3 DNA binding domain containing protein, expressed
LOC_Os03g06850Os.38278.2.S1_at11/113+3449132..3449882B3 DNA binding domain containing protein, expressed
LOC_Os03g06850Os.38278.1.S1_at3/113+3449132..3449882B3 DNA binding domain containing protein, expressed
LOC_Os03g06860Os.36451.2.S1_x_at11/113+3450288..3452699transposon protein, putative, unclassified, expressed
LOC_Os03g06860Os.36451.1.S1_at3/113+3450288..3452699transposon protein, putative, unclassified, expressed
LOC_Os03g06870OsAffx.3156.1.S1_at11/113+3455682..3455939expressed protein
LOC_Os03g06880Os.15977.1.S1_at11/113+3458553..3461310pfkB-type carbohydrate kinase family protein, putative, expressed
LOC_Os03g06890OsAffx.24998.1.S1_at11/113+3462464..3464819expressed protein
LOC_Os03g06900OsAffx.10050.1.S1_at11/113+3468980..3479199DNA topoisomerase family protein, expressed
LOC_Os03g06900OsAffx.15517.1.S1_at1/113+3468980..3479199DNA topoisomerase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38278.2.S1_at--733--5771Chr03:3449174..3449198 (25 bp)
GACGATGGTGATGCCTATCTTCCGA
LOC_Os03g06850
Os.38278.2.S1_at--689--8611Chr03:3449179..3449203 (25 bp)
TGGTGATGCCTATCTTCCGATTTTA
LOC_Os03g06850
Os.38278.2.S1_at--1095--8851Chr03:3449182..3449206 (25 bp)
TGATGCCTATCTTCCGATTTTATCC
LOC_Os03g06850
Os.38278.2.S1_at--83--4451Chr03:3449186..3449210 (25 bp)
GCCTATCTTCCGATTTTATCCTTTT
LOC_Os03g06850
Os.38278.2.S1_at--578--6531Chr03:3449197..3449221 (25 bp)
GATTTTATCCTTTTTTCGTAGCATT
LOC_Os03g06850
Os.38278.2.S1_at--506--571Chr03:3449203..3449227 (25 bp)
ATCCTTTTTTCGTAGCATTACACCT
LOC_Os03g06850
Os.38278.2.S1_at--674--10011Chr03:3449215..3449239 (25 bp)
TAGCATTACACCTACTAACAAGTTT
LOC_Os03g06850
Os.38278.2.S1_at--963--10471Chr03:3449220..3449244 (25 bp)
TTACACCTACTAACAAGTTTGGATT
LOC_Os03g06850
Os.38278.2.S1_at--46--2231Chr03:3449232..3449256 (25 bp)
ACAAGTTTGGATTAAACACGAGCAG
LOC_Os03g06850
Os.38278.2.S1_at--979--6531Chr03:3449241..3449262 (22 bp)
GATTAAACACGAGCAGAACAAGACA
LOC_Os03g06850
Os.38278.2.S1_at--480--1511Chr03:3449252..3449422 (25 bp)
AGCAGAACAAGACAATATGGACCTC
LOC_Os03g06850
Target Sequence 
GACGATGGTGATGCCTATCTTCCGATTTTATCCTTTTTTCGTAGCATTACACCTACTAACAAGTTTGGATTAAACACGAG
CAGAACAAGACAATATGGACCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38278.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis