Browse Element(s) Details


Os.39411.1.A1_at

Description gb:CF304040
DB_XREF= gi:33675801
DB_XREF=ABF1--03-O13.g1
CLONE=ABF1--03-O13
TID=Os.39411.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.39411 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5010011/11multidrug resistance protein 1 homolog, putative, expressed
LOC_Os05g312544/11acetyltransferase, GNAT family protein, expressed
LOC_Os09g298104/11retrotransposon protein, putative, unclassified, expressed
LOC_Os04g202202/11G1 to S phase transition protein 1 homolog, putative, expressed
LOC_Os02g263491/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os04g209901/11expressed protein
LOC_Os02g121201/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g50070NANA1+29095823..29096273multidrug resistance protein 1 homolog, putative
LOC_Os01g50080Os.41637.1.S1_at11/111+29101128..29107198ABC transporter family protein, expressed
LOC_Os01g50090NANA1+29109928..29112744retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g50100Os.11800.1.S1_s_at11/111+29112956..29120147multidrug resistance protein 1 homolog, putative, expressed
LOC_Os01g50100Os.39411.1.A1_at11/111+29112956..29120147multidrug resistance protein 1 homolog, putative, expressed
LOC_Os01g50100Os.11800.1.S1_at11/111+29112956..29120147multidrug resistance protein 1 homolog, putative, expressed
LOC_Os01g50110Os.55528.1.S1_at11/111+29123363..29124496Myb-related protein Zm38, putative, expressed
LOC_Os01g50120Os.49669.1.S1_at11/111+29125731..29131287expressed protein
LOC_Os01g50120Os.57098.1.S1_at11/111+29125731..29131287expressed protein
LOC_Os01g50140NANA1+29135092..29135604transposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006808biological_processregulation of nitrogen utilization
GO:0005622cellular_componentintracellular
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005739cellular_componentmitochondrion
GO:0009524cellular_componentphragmoplast
GO:0003713molecular_functiontranscription coactivator activity
GO:0003746molecular_functiontranslation elongation factor activity
GO:0005516molecular_functioncalmodulin binding
GO:0008080molecular_functionN-acetyltransferase activity
GO:0008135molecular_functiontranslation factor activity, nucleic acid binding
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39411.1.A1_at--275--831Chr01:29113337..29113361 (25 bp)
ATGGTTCTGAACGTATGATCTTGGT
LOC_Os01g50100
Os.39411.1.A1_at--966--5451Chr01:29113329..29113353 (25 bp)
GAACGTATGATCTTGGTAGCCACAG
LOC_Os01g50100
Os.39411.1.A1_at--273--7851Chr01:29113315..29113339 (25 bp)
GGTAGCCACAGACAGTAAATTCAAC
LOC_Os01g50100
Os.39411.1.A1_at--368--3151Chr01:29113298..29113322 (25 bp)
AATTCAACTGTGTCTGTGTGTACGC
LOC_Os01g50100
Os.39411.1.A1_at--706--7471Chr01:29113283..29113307 (25 bp)
GTGTGTACGCACTAACTATGATGGA
LOC_Os01g50100
Os.39411.1.A1_at--923--52325Chr12:11050153..11050176 (24 bp)
GAATAAGCCTTGTGGTCTTTGGTCT
NONE
Os.39411.1.A1_at--434--7154Chr09:13249797..13249820 (24 bp)
GTCTTTGGTCTTTGTGGTCCTTCTC
NONE
Os.39411.1.A1_at--278--3693Chr03:9791516..9791535 (20 bp)
CTTTGTGGTCCTTCTCTTGCTTTTA
NONE
Os.39411.1.A1_at--870--87716Chr12:11044880..11044904 (25 bp)
TGTTTTTCCCCTTTTAGGACAGCAT
NONE
Os.39411.1.A1_at--1156--103525Chr12:11045025..11045049 (25 bp)
TTTTAGACTAGTGTGGGCAGCAATT
NONE
Os.39411.1.A1_at--1160--14720Chr12:11050367..11050391 (25 bp)
AGCAATTAGCTAGCAGCCATCCAGC
NONE
Target Sequence 
ATGGTTCTGAACGTATGATCTTGGTAGCCACAGACAGTAAATTCAACTGTGTCTGTGTGTACGCACTAACTATGATGGAA
TAAGCCTTGTGGTCTTTGGTCTTTGTGGTCCTTCTCTTGCTTTTAGGTTGTTTTTCCCCTTTTAGGACAGCATCCTTTCA
GTTTTGCTTTTAGCATCTTTCGGTTTTGCTTTTAGCATCCCCTAGGACAGCATCTAGCATCTCCTTTATGCTTTATTCAG
TTTGGATGCTCTCTAGGACAGCATTGCGTTCAAATTTTAGACTAGTGTGGGCAGCAATTAGCTAGCAGCCATCCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39411.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis