Browse Element(s) Details


Os.39943.1.S1_s_at

Description gb:AK120380.1
DB_XREF= gi:37990003
TID=Os.39943.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.39943 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-031-D05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013072I24, full insert sequence.
FL= gb:AK120380.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0568011/11expressed protein
LOC_Os03g5599011/11Homeobox domain containing protein, expressed
LOC_Os10g339601/11rolled leaf1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g05650OsAffx.26144.1.S1_x_at11/1110+2800492..2803771transposon protein, putative, Mutator sub-class
LOC_Os10g05650OsAffx.26144.3.S1_s_at11/1110+2800492..2803771transposon protein, putative, Mutator sub-class
LOC_Os10g05650OsAffx.26144.3.S1_at8/1110+2800492..2803771transposon protein, putative, Mutator sub-class
LOC_Os10g05660NANA10+2813311..2814946Thaumatin-like protein 1 precursor, putative, expressed
LOC_Os10g05680Os.39943.1.S1_s_at11/1110+2827442..2829627expressed protein
LOC_Os10g05680Os.39943.2.A1_x_at11/1110+2827442..2829627expressed protein
LOC_Os10g05680Os.39943.1.S1_x_at10/1110+2827442..2829627expressed protein
LOC_Os10g05680Os.38340.1.S1_at9/1110+2827442..2829627expressed protein
LOC_Os10g05680Os.39943.2.A1_at8/1110+2827442..2829627expressed protein
LOC_Os10g05690Os.51827.1.S1_x_at10/1110+2833808..2839957AUX1 protein, putative, expressed
LOC_Os10g05690OsAffx.7026.1.S1_x_at4/1110+2833808..2839957AUX1 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0008284biological_processpositive regulation of cell proliferation
GO:0009733biological_processresponse to auxin stimulus
GO:0009855biological_processdetermination of bilateral symmetry
GO:0009887biological_processorgan morphogenesis
GO:0009943biological_processadaxial/abaxial axis specification
GO:0009944biological_processpolarity specification of adaxial/abaxial axis
GO:0009955biological_processadaxial/abaxial pattern formation
GO:0009956biological_processradial pattern formation
GO:0009965biological_processleaf morphogenesis
GO:0010014biological_processmeristem initiation
GO:0010051biological_processvascular tissue pattern formation (sensu Tracheophyta)
GO:0010072biological_processprimary shoot apical meristem specification
GO:0010073biological_processmeristem maintenance
GO:0010075biological_processregulation of meristem size
GO:0010087biological_processvascular tissue development (sensu Tracheophyta)
GO:0010089biological_processxylem histogenesis
GO:0030154biological_processcell differentiation
GO:0045597biological_processpositive regulation of cell differentiation
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39943.1.S1_s_at--649--2352Chr10:2828468..2828492 (25 bp)
AAAGCATGCAGGGATATACTATCAA
LOC_Os10g05680
Os.39943.1.S1_s_at--909--5013Chr10:2828475..2828499 (25 bp)
GCAGGGATATACTATCAAACTGGTT
LOC_Os10g05680
Os.39943.1.S1_s_at--695--7473Chr10:2828508..2828532 (25 bp)
GTGTGTCTGGCTGTGAAATGTTCTG
LOC_Os10g05680
Os.39943.1.S1_s_at--80--9473Chr10:2828513..2828537 (25 bp)
TCTGGCTGTGAAATGTTCTGGACAA
LOC_Os10g05680
Os.39943.1.S1_s_at--240--8353Chr10:2828516..2828540 (25 bp)
GGCTGTGAAATGTTCTGGACAAATT
LOC_Os10g05680
Os.39943.1.S1_s_at--461--8072Chr10:2828551..2828575 (25 bp)
GGAGCAATAGCAATAGTAGTGTTCA
LOC_Os10g05680
Os.39943.1.S1_s_at--164--5154Chr10:2828560..2828584 (25 bp)
GCAATAGTAGTGTTCAATTGTTTGC
LOC_Os10g05680
Os.39943.1.S1_s_at--936--10853Chr10:2828586..2828610 (25 bp)
TTGGTTGTGCATACTCTGCTTCAAC
LOC_Os10g05680
Os.39943.1.S1_s_at--630--7333Chr10:2828592..2828616 (25 bp)
GTGCATACTCTGCTTCAACTATATT
LOC_Os10g05680
Os.39943.1.S1_s_at--50--9892Chr10:2828597..2828621 (25 bp)
TACTCTGCTTCAACTATATTTAGGA
LOC_Os10g05680
Os.39943.1.S1_s_at--854--933Chr10:2828618..2828642 (25 bp)
AGGAATTGCAAGTCTATGTATTTAT
LOC_Os10g05680
Target Sequence 
AAAGCATGCAGGGATATACTATCAAACTGGTTTGCCTTCTGTGTGTCTGGCTGTGAAATGTTCTGGACAAATTGGTTGAC
AATGGAGCAATAGCAATAGTAGTGTTCAATTGTTTGCCTTGGTTGTGCATACTCTGCTTCAACTATATTTAGGAATTGCA
AGTCTATGTATTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39943.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis