Browse Element(s) Details


Os.40423.1.S1_at

Description gb:AK072103.1
DB_XREF= gi:32982126
TID=Os.40423.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.40423 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative Cf2Cf5 disease resistance protein (P0518F01.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013120K23, full insert sequence.
FL= gb:AK072103.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4178010/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g41730Os.37007.1.S1_at11/111+23951137..23953867Protein kinase domain containing protein, expressed
LOC_Os01g41730Os.37007.2.S1_at11/111+23951137..23953867Protein kinase domain containing protein, expressed
LOC_Os01g41740OsAffx.23625.1.S1_at11/111+23957292..23958085hypothetical protein
LOC_Os01g41750Os.24878.1.A1_at11/111+23958615..23962223Leucine Rich Repeat family protein, expressed
LOC_Os01g41760NANA1+23964090..23964416hypothetical protein
LOC_Os01g41770OsAffx.21394.1.S1_at11/111+23966834..23969695Leucine Rich Repeat family protein, expressed
LOC_Os01g41780Os.40423.2.S1_x_at11/111+23975277..23978326Leucine Rich Repeat family protein, expressed
LOC_Os01g41780Os.40423.1.S1_at10/111+23975277..23978326Leucine Rich Repeat family protein, expressed
LOC_Os01g41790OsAffx.21393.1.S1_at11/111+23982858..23985164hypothetical protein
LOC_Os01g41800Os.20589.1.S1_at7/111+23989911..23991292Cytochrome P450 72A1, putative, expressed
LOC_Os01g41800Os.26891.1.A1_x_at1/111+23989911..23991292Cytochrome P450 72A1, putative, expressed
LOC_Os01g41810Os.22681.1.S1_at10/111+24000019..24002808Cytochrome P450 family protein, expressed
LOC_Os01g41810Os.26891.1.A1_x_at2/111+24000019..24002808Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0007165biological_processsignal transduction
GO:0050832biological_processdefense response to fungi
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.40423.1.S1_at--647--1151Chr01:23975419..23975443 (25 bp)
AGAAAATTCCTATGAAGAACTATGG
LOC_Os01g41780
Os.40423.1.S1_at--642--2031Chr01:23975401..23975425 (25 bp)
ACTATGGATGTTTTATTCCACTGCA
LOC_Os01g41780
Os.40423.1.S1_at--1044--9211Chr01:23975385..23975409 (25 bp)
TCCACTGCATATCTTTTCATACTCT
LOC_Os01g41780
Os.40423.1.S1_at--1071--4951Chr01:23975379..23975403 (25 bp)
GCATATCTTTTCATACTCTTCTTTT
LOC_Os01g41780
Os.40423.1.S1_at--603--251Chr01:23975377..23975401 (25 bp)
ATATCTTTTCATACTCTTCTTTTTT
LOC_Os01g41780
Os.40423.1.S1_at--487--10371Chr01:23975356..23975380 (25 bp)
TTTTTTCTTGTGATGTGCGCATCAT
LOC_Os01g41780
Os.40423.1.S1_at--665--10551Chr01:23975352..23975376 (25 bp)
TTCTTGTGATGTGCGCATCATTTTT
LOC_Os01g41780
Os.40423.1.S1_at--784--3731Chr01:23975308..23975332 (25 bp)
CTAAAGAGAGAGATATTGTAACCAA
LOC_Os01g41780
Os.40423.1.S1_at--217--6511Chr01:23975297..23975321 (25 bp)
GATATTGTAACCAAGAAGCTCTTTA
LOC_Os01g41780
Os.40423.1.S1_at--78--5411Chr01:23975283..23975307 (25 bp)
GAAGCTCTTTAATAATACCTGTACC
LOC_Os01g41780
Os.40423.1.S1_at--106--3671Chr01:23975277..23975301 (25 bp)
CTTTAATAATACCTGTACCGTTCAT
NONE
Target Sequence 
AGAAAATTCCTATGAAGAACTATGGATGTTTTATTCCACTGCATATCTTTTCATACTCTTCTTTTTTTTCTTGTGATGTG
CGCATCATTTTTTTTTAACAGAGTAGTAGTTCTAAAGAGAGAGATATTGTAACCAAGAAGCTCTTTAATAATACCTGTAC
CGTTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.40423.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis