Browse Element(s) Details


Os.40423.2.S1_x_at

Description gb:NM_192644.1
DB_XREF= gi:34912371
GEN=P0518F01.22
TID=Os.40423.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.40423 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative Cf2Cf5 disease resistance protein (P0518F01.22), mRNA.
PROD=putative Cf2Cf5 disease resistance protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4178011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g41730Os.37007.1.S1_at11/111+23951137..23953867Protein kinase domain containing protein, expressed
LOC_Os01g41730Os.37007.2.S1_at11/111+23951137..23953867Protein kinase domain containing protein, expressed
LOC_Os01g41740OsAffx.23625.1.S1_at11/111+23957292..23958085hypothetical protein
LOC_Os01g41750Os.24878.1.A1_at11/111+23958615..23962223Leucine Rich Repeat family protein, expressed
LOC_Os01g41760NANA1+23964090..23964416hypothetical protein
LOC_Os01g41770OsAffx.21394.1.S1_at11/111+23966834..23969695Leucine Rich Repeat family protein, expressed
LOC_Os01g41780Os.40423.2.S1_x_at11/111+23975277..23978326Leucine Rich Repeat family protein, expressed
LOC_Os01g41780Os.40423.1.S1_at10/111+23975277..23978326Leucine Rich Repeat family protein, expressed
LOC_Os01g41790OsAffx.21393.1.S1_at11/111+23982858..23985164hypothetical protein
LOC_Os01g41800Os.20589.1.S1_at7/111+23989911..23991292Cytochrome P450 72A1, putative, expressed
LOC_Os01g41800Os.26891.1.A1_x_at1/111+23989911..23991292Cytochrome P450 72A1, putative, expressed
LOC_Os01g41810Os.22681.1.S1_at10/111+24000019..24002808Cytochrome P450 family protein, expressed
LOC_Os01g41810Os.26891.1.A1_x_at2/111+24000019..24002808Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0007165biological_processsignal transduction
GO:0050832biological_processdefense response to fungi
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.40423.2.S1_x_at--542--2911Chr01:23975858..23975882 (25 bp)
AAGGAGATTGGAGTCCCTGGACCTA
LOC_Os01g41780
Os.40423.2.S1_x_at--295--10311Chr01:23975822..23975846 (25 bp)
TTTAGTTGGTGAAATCCCCTCGATT
LOC_Os01g41780
Os.40423.2.S1_x_at--408--551Chr01:23975809..23975833 (25 bp)
ATCCCCTCGATTTTATCAGACCTTA
LOC_Os01g41780
Os.40423.2.S1_x_at--885--1371Chr01:23975792..23975816 (25 bp)
AGACCTTACTTTTTTGAGCTGCTTA
LOC_Os01g41780
Os.40423.2.S1_x_at--1063--5891Chr01:23975777..23975801 (25 bp)
GAGCTGCTTAAACTTGTCCTACAAC
LOC_Os01g41780
Os.40423.2.S1_x_at--213--8191Chr01:23975743..23975767 (25 bp)
GGAAGAATCCCCTCAGGACAACAGC
LOC_Os01g41780
Os.40423.2.S1_x_at--983--10111Chr01:23975696..23975720 (25 bp)
TATGTACATCGGCAATCCTGGACTT
LOC_Os01g41780
Os.40423.2.S1_x_at--709--3011Chr01:23975683..23975707 (25 bp)
AATCCTGGACTTTGTGGACTTCCTC
LOC_Os01g41780
Os.40423.2.S1_x_at--389--10151Chr01:23975658..23975682 (25 bp)
TTTCCACCAATTGTTCCACGAACAG
LOC_Os01g41780
Os.40423.2.S1_x_at--387--4811Chr01:23975543..23975567 (25 bp)
GCTCTGGATAGTGTTCTGCACCATC
LOC_Os01g41780
Os.40423.2.S1_x_at--13--3511Chr01:23975505..23975529 (25 bp)
CATGGAGGATCGCTTATTTTCAGTT
LOC_Os01g41780
Target Sequence 
AAGGAGATTGGAGTCCCTGGACCTATCCTACAATGATTTAGTTGGTGAAATCCCCTCGATTTTATCAGACCTTACTTTTT
TGAGCTGCTTAAACTTGTCCTACAACAATCTATCAGGAAGAATCCCCTCAGGACAACAGCTACAAACACTTAATAATCTT
TATATGTACATCGGCAATCCTGGACTTTGTGGACTTCCTCTTTCCACCAATTGTTCCACGAACAGAACAAACAAAATTGT
CCAGAATGAACATGATGACGCATCACATGATACAACATATTTGTACATCAGCACAAGTGCAGGGTTTGTGGTGGGGCTCT
GGATAGTGTTCTGCACCATCCTGTTCAAGAAATCATGGAGGATCGCTTATTTTCAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.40423.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis