Browse Element(s) Details


Os.41248.2.A1_at

Description gb:AK067549.1
DB_XREF= gi:32977567
TID=Os.41248.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.41248 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0516D04.15 (P0516D04.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013111A01, full insert sequence.
FL= gb:AK067549.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1776011/11Cytochrome P450 family protein, expressed
LOC_Os09g064646/11CCT motif family protein, expressed
LOC_Os01g486506/11expressed protein
LOC_Os01g252306/11hypothetical protein
LOC_Os05g242306/11hypothetical protein
LOC_Os03g271606/11hypothetical protein
LOC_Os06g274405/11hypothetical protein
LOC_Os10g148894/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g255204/11hypothetical protein
LOC_Os11g189804/11hypothetical protein
LOC_Os03g374114/11MATE efflux family protein, expressed
LOC_Os05g175302/11transposon protein, putative, unclassified
LOC_Os10g136302/11expressed protein
LOC_Os10g222902/11hypothetical protein
LOC_Os08g287501/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g044801/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g17730OsAffx.2657.1.S1_at11/112+10239686..10240108Leucine Rich Repeat family protein
LOC_Os02g17740Os.47463.1.S1_x_at5/112+10241914..10245611transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g17740Os.14491.2.S1_x_at4/112+10241914..10245611transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g17750NANA2+10248300..10251632transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g17760Os.41248.2.A1_at11/112+10261984..10268670Cytochrome P450 family protein, expressed
LOC_Os02g17760Os.41248.5.S1_x_at5/112+10261984..10268670Cytochrome P450 family protein, expressed
LOC_Os02g17770NANA2+10271262..10271663hypothetical protein
LOC_Os02g17780Os.16326.1.S1_at10/112+10273717..10283725Ent-kaurene synthase A, chloroplast precursor, putative, expressed
LOC_Os02g17790NANA2+10292506..10294000hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007623biological_processcircadian rhythm
GO:0009909biological_processregulation of flower development
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0016020cellular_componentmembrane
GO:0003700molecular_functiontranscription factor activity
GO:0004672molecular_functionprotein kinase activity
GO:0005215molecular_functiontransporter activity
GO:0008270molecular_functionzinc ion binding
GO:0015297molecular_functionantiporter activity
GO:0016301molecular_functionkinase activity
GO:0019825molecular_functionoxygen binding
GO:0030246molecular_functioncarbohydrate binding
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.41248.2.A1_at--778--25150Chr12:6435767..6435789 (23 bp)
ATATCGGCTGAACCTCTAGTGTACT
NONE
Os.41248.2.A1_at--400--74313Chr11:23809727..23809748 (22 bp)
GTGTACTTGTATGAACCCCTTTGCC
NONE
Os.41248.2.A1_at--849--417148Chr12:9166168..9166192 (25 bp)
CCCTTTGCCTCACGATATCGATTAA
NONE
Os.41248.2.A1_at--949--1011159Chr12:6435841..6435865 (25 bp)
TATGTGCCATCCTCTAATAGCTCAA
NONE
Os.41248.2.A1_at--538--10016Chr04:12740820..12740863 (25 bp)
TAGCTCAATCATTCACTCAAACCTG
NONE
Os.41248.2.A1_at--1124--1075157Chr12:9157423..9157447 (25 bp)
TTGACTCCTCAATCACCTTTGGCAT
NONE
Os.41248.2.A1_at--973--843121Chr12:6435931..6435955 (25 bp)
GGCCATGCACTTCCATAATCTACAA
NONE
Os.41248.2.A1_at--39--7575Chr11:9981287..9981311 (25 bp)
GGGCCCAGAGATATCTTTCCATAGG
NONE
Os.41248.2.A1_at--382--6551Chr02:10268407..10268431 (25 bp)
GATTATTCGTATCCCACTACATATT
LOC_Os02g17760
Os.41248.2.A1_at--675--191113Chr12:6436071..6436095 (25 bp)
ACGGAGTAGCGTTTAGCAGTCCCTA
NONE
Os.41248.2.A1_at--980--7388Chr12:21450214..21450238 (25 bp)
ATGTTCACCAACATGTGTCCACATT
NONE
Target Sequence 
ATATCGGCTGAACCTCTAGTGTACTTGTATGAACCCCTTTGCCTCACGATATCGATTAAGCTCAAGGCTAGATATGTGCC
ATCCTCTAATAGCTCAATCATTCACTCAAACCTGTTGATAGATTATATAACTTGTGATTGACTCCTCAATCACCTTTGGC
ATGGCCATGCACTTCCATAATCTACAACATCGAGGGGCCCAGAGATATCTTTCCATAGGAGGGGCAAATCTCATCTTGAT
TATTCGTATCCCACTACATATTTCATAGCATACCCGAAAACTACTTTTATAACTACCCAATTACGGAGTAGCGTTTAGCA
GTCCCTAAGTAATCTACTACACATGTTGAGAACCATGATAATCTCAGGTCTAAGGATTCAACACCAACACTCAATGAGAT
CACTGATGACATAACACATATGGCTCTTGCAGTGTCTCATGTTGGGTCTATCCAACAACATGTTCACCAACATGTGTCCA
CATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.41248.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis