Browse Element(s) Details


Os.41283.1.S1_at

Description gb:NM_192764.1
DB_XREF= gi:34912611
GEN=P0046B10.23
TID=Os.41283.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.41283 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0046B10.23 (P0046B10.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0046B10.23 (P0046B10.23), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g427308/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g42710Os.1021.1.S1_at9/111+24619385..24626543LSD1 zinc finger family protein, expressed
LOC_Os01g42720Os.34525.2.S1_x_at11/111+24626992..24628080expressed protein
LOC_Os01g42720Os.34525.2.S1_at11/111+24626992..24628080expressed protein
LOC_Os01g42720OsAffx.11445.1.S1_s_at11/111+24626992..24628080expressed protein
LOC_Os01g42720Os.34525.1.S1_s_at11/111+24626992..24628080expressed protein
LOC_Os01g42720Os.34525.1.S1_x_at11/111+24626992..24628080expressed protein
LOC_Os01g42730Os.41283.1.S1_at8/111+24639449..24644008GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g42740Os.20364.1.S1_at1/111+24652185..24652514Ammonium transporter 2, putative
LOC_Os01g42750OsAffx.11446.1.S1_at10/111+24655231..24657138hypothetical protein
LOC_Os01g42750OsAffx.787.1.S1_at2/111+24655231..24657138hypothetical protein
LOC_Os01g42760OsAffx.9134.1.S1_s_at11/111+24661228..24663006expressed protein
LOC_Os01g42770Os.37805.1.S1_at11/111+24668079..24670487expressed protein
LOC_Os01g42770Os.50844.1.S1_at11/111+24668079..24670487expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.41283.1.S1_at--379--5691Chr01:24640848..24640872 (25 bp)
GACTTCCGGCAAGGCGCAAATTTCG
LOC_Os01g42730
Os.41283.1.S1_at--450--5111Chr01:24640943..24640967 (25 bp)
GCACTCCCTCGATGAGCAGATGCAG
LOC_Os01g42730
Os.41283.1.S1_at--1109--2731Chr01:24640974..24640998 (25 bp)
AAGAAGCTACTCACTACTGTCTCCT
LOC_Os01g42730
Os.41283.1.S1_at--715--5851Chr01:24641875..24641899 (25 bp)
GACCAAGTCACTTTTCCTTGTGGGA
LOC_Os01g42730
Os.41283.1.S1_at--273--4851Chr01:24641956..24641980 (25 bp)
GCTACACGAGCTTGTTCCTAAGGTT
LOC_Os01g42730
Os.41283.1.S1_at--704--10811Chr01:24641979..24642003 (25 bp)
TTGTCGGTACCATAACCTCAGCTAT
LOC_Os01g42730
Os.41283.1.S1_at--270--1451Chr01:24642272..24642296 (25 bp)
AGAAGCTCAGGAATCTTTACCCCGA
LOC_Os01g42730
Os.41283.1.S1_at--140--4951Chr01:24642331..24642355 (25 bp)
GCATTGAATATATTCCTTGCCCCAC
LOC_Os01g42730
Os.41283.1.S1_at--289--3451NONE
CAGTTTGGTCTGGTCAGTGTCCACT
NONE
Os.41283.1.S1_at--7--1111Chr01:24644897..24644921 (25 bp)
AGTGTCCACTTTCTGGTTTCACAAA
NONE
Os.41283.1.S1_at--633--8211Chr01:24644923..24644947 (25 bp)
GGAATTGGAAGCCTTGTCTCTGGTC
NONE
Target Sequence 
GACTTCCGGCAAGGCGCAAATTTCGCGGTCGGCGGCGCCACCGCCCTCAACGGATCATTCTTCCGGGACCGCGGCGTGGA
GCCGACATGGACGCCGCACTCCCTCGATGAGCAGATGCAGTGGTTCAAGAAGCTACTCACTACTGTCTCCTCGTCAGAGT
CCGAACTCAATGATATCATGACCAAGTCACTTTTCCTTGTGGGAGAGGTAGGCGGAAATGATTACAACCATCTAATTGTC
AGGGGGAAATCTCTAGATGAGCTACACGAGCTTGTTCCTAAGGTTGTCGGTACCATAACCTCAGCTATCACGGAGGAGCT
GGAGAAGCTCAGGAATCTTTACCCCGATGTATCCATCATTTATGCTGATTATTATGGTGCTGCATTGAATATATTCCTTG
CCCCACTCCAGTTTGGTCTGGTCAGTGTCCACTTTCTGGTTTCACAAACGGAATTGGAAGCCTTGTCTCTGGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.41283.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis