Browse Element(s) Details


Os.42531.1.S1_at

Description gb:AK121919.1
DB_XREF= gi:37991542
TID=Os.42531.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.42531 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0031D02.27 (P0031D02.27), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033106D14, full insert sequence.
FL= gb:AK121919.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6096011/11LOB domain protein 13, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g60910Os.32752.2.S1_s_at11/111+35555762..35561222CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os01g60910Os.32752.1.S1_at11/111+35555762..35561222CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os01g60920Os.50407.1.S1_at10/111+35564913..35567690F-box domain containing protein, expressed
LOC_Os01g60930Os.35704.1.S1_at11/111+35570772..35573426expressed protein
LOC_Os01g60940Os.35704.2.S1_at11/111+35574725..35575774expressed protein
LOC_Os01g60960Os.42531.1.S1_at11/111+35584410..35585972LOB domain protein 13, putative, expressed
LOC_Os01g60970NANA1+35599507..35604567transposon protein, putative, unclassified
LOC_Os01g60980NANA1+35606726..35613447retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0009799biological_processdetermination of symmetry
GO:0009954biological_processproximal/distal pattern formation
GO:0009965biological_processleaf morphogenesis
GO:0010016biological_processshoot morphogenesis
GO:0048441biological_processpetal development
GO:0003677molecular_functionDNA binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.42531.1.S1_at--49--5011Chr01:35585355..35585379 (25 bp)
GCATGGGCGCCATCTCGATGCTGCA
LOC_Os01g60960
Os.42531.1.S1_at--815--6391Chr01:35585428..35585452 (25 bp)
GATCTTCAAGCGCAGGTACCGGCAG
LOC_Os01g60960
Os.42531.1.S1_at--903--3811Chr01:35585526..35585550 (25 bp)
CTCCATCGATGCACGCGAGGGACGT
LOC_Os01g60960
Os.42531.1.S1_at--361--3991Chr01:35585638..35585662 (25 bp)
CGGGCAGCCATCAACAAGTACTACT
LOC_Os01g60960
Os.42531.1.S1_at--103--2851Chr01:35585653..35585677 (25 bp)
AAGTACTACTGACTACAGCTCCCTC
LOC_Os01g60960
Os.42531.1.S1_at--796--1591Chr01:35585669..35585693 (25 bp)
AGCTCCCTCAACACAAGTGAGCATG
LOC_Os01g60960
Os.42531.1.S1_at--486--4991Chr01:35585689..35585713 (25 bp)
GCATGCTGCATACTTTGGTTGACTT
LOC_Os01g60960
Os.42531.1.S1_at--294--451Chr01:35585724..35585748 (25 bp)
ATCTAACATTTTGGTGTGATCACAA
LOC_Os01g60960
Os.42531.1.S1_at--179--10171Chr01:35585813..35585837 (25 bp)
TATAGTTGTGGATACCTTGGGTGAA
LOC_Os01g60960
Os.42531.1.S1_at--554--7271Chr01:35585849..35585873 (25 bp)
GTCCAATGGATGTATCAATCCTTAA
LOC_Os01g60960
Os.42531.1.S1_at--98--10791Chr01:35585884..35585908 (25 bp)
TTGTCCATTGTGATTGGGCGGTTGA
LOC_Os01g60960
Target Sequence 
GCATGGGCGCCATCTCGATGCTGCAGCAGCAGGTGAACGCGCTGGAGGCCGAGCTGGAAGCGGTCAGGGCCGAGATCTTC
AAGCGCAGGTACCGGCAGGCCGGCGCCGCCACCGGCCTCATGGACGACGTCCAAGTCCATATCACCGCCGGCTTCGCCGC
TCCTCCTCCTCCTCCATCGATGCACGCGAGGGACGTGGTGTCAGTGGCGGACGCCGGCGGGCAAGGGCAAGAGTTGGCCG
GAGCGCCGGTGATCTCGTCGGCGTCTCCGCCGGTGTATCCTGCCGGGCAGCCATCAACAAGTACTACTGACTACAGCTCC
CTCAACACAAGTGAGCATGCTGCATACTTTGGTTGACTTGCATGGATTTATCTAACATTTTGGTGTGATCACAATTAAGC
CGGGGAAAATAAGATCTGTGTGCGAGATTAGTTATATATATGTTTCTCTAGAAATAGATATAGTTGTGGATACCTTGGGT
GAAGAAAAGAATTTGTCCAATGGATGTATCAATCCTTAATTTTATTGTATTGTCCATTGTGATTGGGCGGTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.42531.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis